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Zeitplan_Ent
AMB-Git-Hub edited this page Jun 22, 2021
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| Group | Day | Time | Theme | Take place? (Couse by no) |
|---|---|---|---|---|
| All | 15.06.2021 | 20:00 - 21:15 | First general Meeting | Yes |
| G 1 | 15.06.2021 | 21:15 - 22:00 | Todos G 1 | Yes |
| G 1 | 17.06.2021 | 19:30 - 20:30 | Revision G 1 | Yes |
| All / 2 | 20.06.2021 | 14:30 - 15:30 | Review. Missing parameters in Figure 4 reproduction, Some difficulties by building SBGN file in group 3 | Yes |
| All / 2 | 20.06.2021 | 20:00 - 21:00 | Meeting notes (AMB): Review, Planning, Export Options discussed with Dagmar. Documentation can be provided in form of a wiki clone, additional synopses and exec. summary to be added. Figure 4 reproduction is missing parameters, this will be directed at Clemens. Next meeting is set to next week. Until July 4th further refinement of the project is allowed, but it is not expected, that this would include major time resources | Yes |
| All | 22.06.2021 | 20:00 - 21:00 | Presentation of the project | - |
Bioinformatics & Systems biology SS 2021
- Synopsis Group 1
- Sources of Bachmann model
- Software tools for simulation
- How to build a Fully Featured COMBINE Archive?
- Communication channels
- Provision of a template for documentation
- Schedule (draft)
- Review of results
- COMBINE Archive (Testversion!)
- Synopsis Group 2
- Finding of SBML models
- Comparison of SBML models
- The chosen one
- Simulation tools
- Metadata
- Improving metadata annotations
- Synopsis Group 3
- SBGN Maps for Bachmann model
- Choice of SBGN language
- Tool to draw the SBGN Map
- SBGN-Map Drawing, Validation & Beautification
- Integration into COMBINE Archive
- Synopsis Group 4
- Selection of experiments
- Selection of SED-ML tool(s)
- Generation of SED-ML file(s)
- Integration into COMBINE Archive
- Test of SED-ML files and COMBINE Archive