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This public repository is the collaborative work of the participants of the module "Bioinformatik und Systembiologie" in the Master Program BIDS, organized by the Graduate School Rhein-Neckar in cooperation with MIRACUM, a consortium of the Medizininformatik-Initiative.
Our goal is to provide the Bachmann Model, a showcase biomodel, as a fully-featured COMBINE archive, a standardized container for data files related to biological simulation studies described by Scharm & Waltemath in A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos.
We use this Wiki for the data management, documentation and easy understanding of the Bachmann Model as a Fully Featured COMBINE Archive. The core concepts and results of this wiki are summarized in the executive summary You will find a short summary of each works group in the synopsis of each group. We have laid out all relevant documentations steps within individual wiki-pages accesable from the Wiki sidebar.
We need a teamwork to build the Bachmann Model as a Fully Featured COMBINE Archive. The teams of two or three members have different functions.
- Group 1: Review of existing materials; composition of the COMBINE archive; documentation template; review of intermediate results.
- Group 2: Comparison of provided SBML models, selection and provision of detailed metadata. We refer to this team as the 'over-performers' later on.
- Group 3: Provision of the SBGN model (graphical representation).
- Group 4: Provision of at least one SED-ML script (more than one if necessary).
!No comprende nada? Please check out our glossary
This project was created under the guidance, monitoring and continuous review of Prof. Dr. Dagmar Waltemath
