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Fixing environment
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FabianHoerst committed Apr 2, 2024
1 parent 085dbee commit ea7fe21
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Showing 2 changed files with 18 additions and 16 deletions.
2 changes: 2 additions & 0 deletions .github/workflows/test_build.yml
Original file line number Diff line number Diff line change
Expand Up @@ -40,5 +40,7 @@ jobs:
run: python -m pytest -vv -s ./tests/test_macenko_module
- name : Run Core Tests
run: python -m pytest -vv -s ./tests/test_core_modules
- name : Run Core Tests
run: python -m pytest -vv -s ./tests/test_dicom_module
- name : Run Dataset and Dataloader Tests
run: python -m pytest -vv -s ./tests/test_pytorch_dataset
32 changes: 16 additions & 16 deletions environment.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: pathopatch_env
name: pathopatch_env_2
channels:
- conda-forge
- defaults
Expand All @@ -8,28 +8,28 @@ dependencies:
- pip=23.0
- python-javabridge
- pip:
- Pillow==9.5.0
- PyYAML==6.0
- Pillow>=9.5.0
- PyYAML
- Shapely==1.8.5.post1
- black==23.1.0
- colorama==0.4.6
- flake8-html==0.4.3
- flake8==6.0.0
- genbadge==1.1.0
- black
- colorama
- flake8-html
- flake8
- genbadge
- geojson>=3.0.0
- matplotlib==3.7.1
- natsort==8.4.0
- matplotlib
- natsort
- numpy>1.22,<1.24
- opencv_python_headless==4.5.4.58
- openslide_python==1.2.0
- pandas==1.5.3
- pre-commit==3.0.3
- openslide_python>=1.3.1
- pandas
- pre-commit
- pydantic==1.10.4
- pytest==7.4.4
- pytest-sugar==0.9.7
- rasterio==1.3.5.post1
- scikit-image==0.19.3
- torchvision==0.16.2
- tqdm==4.65.0
- scikit-image
- torchvision
- tqdm
- wsidicomizer==0.13.2
- wsidicom==0.20.4

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