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Fix FAD/Oxygen-Peroxide Duplicate Reactions #670

Merged
merged 17 commits into from
Sep 24, 2023
Merged

Fix FAD/Oxygen-Peroxide Duplicate Reactions #670

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c818b08
fix: removed MAR01639 and merged annotations into MAR01638
Devlin-Moyer Jun 27, 2023
fb0ea6c
fix: removed MAR03301 and merged annotations into MAR02804
Devlin-Moyer Jun 27, 2023
fdaa58c
fix: removed MAR03306 and merged annotations into MAR02808
Devlin-Moyer Jun 27, 2023
5c594ab
fix: removed MAR03311 and merged annotations into MAR02810
Devlin-Moyer Jun 27, 2023
c459bce
fix: removed MAR04966 and merged annotations into MAR02818
Devlin-Moyer Jun 27, 2023
af6e183
fix: removed MAR03364 and merged annotations into MAR03276
Devlin-Moyer Jun 27, 2023
e20af6d
fix: removed MAR03369 and merged annotations into MAR03289
Devlin-Moyer Jun 27, 2023
9d7b81c
fix: reversed MAR00059 and removed the 0.5 O2 that shouldn't've been …
Devlin-Moyer Jun 27, 2023
3d98ec1
feat: added MAR20114 to represent reduction of O2 by FADH2 in peroxis…
Devlin-Moyer Jun 27, 2023
4f208c7
fix: replaced O2 with FAD and H2O2 with FADH2 in all peroxisomal reac…
Devlin-Moyer Jun 27, 2023
8455eb7
chore: merge in latest develop branch
Devlin-Moyer Jul 19, 2023
cc2b5ca
Merge branch 'develop' into fix/FAD_O2_dupes
haowang-bioinfo Sep 20, 2023
4fa0d28
fix: re-remove duplicated reaction MAR01639
haowang-bioinfo Sep 20, 2023
452c1e8
fix: re-remove deprecated reactions from "reactions.tsv"
haowang-bioinfo Sep 20, 2023
1f3527d
fix: removed MAR00059 for being less accurate version of MAR01706
Devlin-Moyer Sep 21, 2023
5852d9f
Fixed GPR of MAR01706 and added reference
Devlin-Moyer Sep 21, 2023
d5dbfe1
chore: resolve merge conflicts
Devlin-Moyer Sep 21, 2023
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8 changes: 8 additions & 0 deletions data/deprecatedIdentifiers/deprecatedReactions.tsv
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Expand Up @@ -207,7 +207,15 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR01666" "" "" "" "" "R-HSA-193399" "HMR_1666" "MNXR125298" "HMR_1666" "RCR20514" "" 0 "RHEA:72683" "RHEA:72683" "HMR_1666"
"MAR01458" "" "HSD17B4x" "" "" "" "HSD17B4x" "MNXR100720" "" "" "" 0 "" "" "HSD17B4x"
"MAR01651" "R04812" "" "RE3250M" "" "" "HMR_1651" "" "HMR_1651" "RCR12831" "" 0 "" "" "HMR_1651"
"MAR01639" "" "" "RE3247X;RE3247M" "r0706" "R-HSA-192335" "RE3247X;r0706;HMR_1637;RE3247M" "MNXR105369;MNXR124225" "HMR_1639;HMR_1637" "RCR10917;RCR13607" "" 0 "" "" "HMR_1639;HMR_1637;MAR01637"
"MAR03301" "" "" "RE1516X" "" "" "" "" "HMR_3301" "RCR12606" "" 0 "" "" "HMR_3301"
"MAR03306" "" "" "RE1517X" "" "" "" "" "HMR_3306" "RCR12610" "" 0 "" "" "HMR_3306"
"MAR03311" "" "" "RE1518X" "" "" "" "" "HMR_3311" "RCR14519" "" 0 "" "" "HMR_3311"
"MAR04966" "" "FAOXC101C102x" "" "" "" "FAOXC101C102x" "" "" "" "" 0 "" "" "FAOXC101C102x"
"MAR03364" "" "" "RE2913X" "" "" "" "" "HMR_3364" "RCR12576" "" 0 "" "" "HMR_3364"
"MAR03369" "" "" "RE2914X" "" "" "" "" "HMR_3369" "RCR12580" "" 0 "" "" "HMR_3369"
"MAR09887" "" "GLNB0AT3tc" "" "" "" "GLNB0AT3tc" "" "" "" "" 0 "" "" "GLNB0AT3tc"
"MAR00059" "" "ACOX22x" "" "" "" "ACOX22x" "MNXR95389" "" "" "" 0 "" "" "ACOX22x"
"MAR00024" "" "" "" "" "" "HMR_0024" "" "HMR_0024" "RCR13367" "" 0 "" "" "HMR_0024"
"MAR00025" "" "" "" "" "" "HMR_0025;HMR_0030" "" "HMR_0025;HMR_0030" "RCR20226;RCR20227" "" 0 "" "" "HMR_0025;HMR_0030;MAR00030"
"MAR00026" "" "" "" "" "" "HMR_0026" "" "HMR_0026" "RCR21051" "" 0 "" "" "HMR_0026"
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