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refactor: merge MAR08973 into MAR04474 #365

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merged 4 commits into from
Mar 4, 2022
Merged

refactor: merge MAR08973 into MAR04474 #365

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997d2e1
refactor: merge MAR08973 into MAR04474 resolves #346
mihai-sysbio Feb 18, 2022
b45e758
fix: reconcile conflict with deprecatedReactions on develop branch
JonathanRob Mar 4, 2022
46c7c9f
fix: add empty line at end of file for consistency
JonathanRob Mar 4, 2022
c1118c3
Merge branch 'develop' into refactor/merge-MAR08973-into-MAR04474
JonathanRob Mar 4, 2022
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3 changes: 2 additions & 1 deletion data/deprecatedIdentifiers/deprecatedReactions.tsv
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Expand Up @@ -12,4 +12,5 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR07262" "" "DOLICHOL_Lter" "" "" "" "" "MNXR97703" "HMR_7262" "RCR20987" "" 0 "" "" "HMR_7262"
"MAR11269" "" "" "" "" "" "ELAIDCRNtr" "" "" "" "" 0 "" "" "ELAIDCRNtr"
"MAR11275" "" "" "" "" "" "PCRNtr" "" "" "" "" 0 "" "" "PCRNtr"
"MAR11273" "" "" "" "" "" "LNLCCRNtr" "" "" "" "" 0 "" "" "LNLCCRNtr"
"MAR11273" "" "" "" "" "" "LNLCCRNtr" "" "" "" "" 0 "" "" "LNLCCRNtr"
"MAR08973" "" "GNDc" "" "" "" "GNDc" "" "" "" "" 0 "" "" "GNDc"
25 changes: 3 additions & 22 deletions model/Human-GEM.yml
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Expand Up @@ -70587,7 +70587,7 @@
- confidence_score: 0
- !!omap
- id: "MAR04474"
- name: ""
- name: "Phosphogluconate dehydrogenase"
- metabolites: !!omap
- MAM01169c: -1
- MAM01596c: 1
Expand All @@ -70597,10 +70597,10 @@
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000142657"
- rxnNotes: ""
- rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806"
- rxnFrom: "HMRdatabase"
- eccodes: "1.1.1.44"
- references: "PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792"
- references: "PMID:12398160;PMID:1504088;PMID:15558954;PMID:16756494;PMID:2753047;PMID:3943305;PMID:6212636;PMID:7194116;PMID:7225115;PMID:7623792;PMID:4382012;PMID:13575411"
- subsystem:
- "Pentose phosphate pathway"
- confidence_score: 0
Expand Down Expand Up @@ -248141,25 +248141,6 @@
- subsystem:
- "Transport reactions"
- confidence_score: 0
- !!omap
- id: "MAR08973"
- name: "Phosphogluconate Dehydrogenase"
- metabolites: !!omap
- MAM01169c: -3
- MAM01596c: 3
- MAM02554c: -3
- MAM02555c: 3
- MAM02846c: 3
- lower_bound: 0
- upper_bound: 1000
- gene_reaction_rule: "ENSG00000142657"
- rxnNotes: "Harpers illustrated Biochemistry (2009) 28th edition pages 174-183, ISBN:9781282335806"
- rxnFrom: "Recon3D"
- eccodes: "1.1.1.44"
- references: "PMID:4382012;PMID:13575411"
- subsystem:
- "Pentose phosphate pathway"
- confidence_score: 0
- !!omap
- id: "MAR08974"
- name: "Hypotaurine Oxidase, Extracellular"
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1 change: 0 additions & 1 deletion model/reactions.tsv
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Expand Up @@ -9741,7 +9741,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx
"MAR08970" "" "FRDPtcr" "" "" "" "FRDPtcr" "MNXR99646" "" "" "" 0 "" "" "FRDPtcr"
"MAR08971" "" "G6PDH2c" "" "" "" "G6PDH2c" "" "" "" "" 0 "" "" "G6PDH2c"
"MAR08972" "" "GLUPROASCT1" "" "" "" "GLUPROASCT1" "MNXR100286" "" "" "" 0 "" "" "GLUPROASCT1"
"MAR08973" "" "GNDc" "" "" "" "GNDc" "" "" "" "" 0 "" "" "GNDc"
"MAR08974" "" "HYPTROXe" "" "" "" "HYPTROXe" "MNXR100764" "" "" "" 0 "" "" "HYPTROXe"
"MAR08975" "" "INSK" "" "" "" "INSK" "MNXR100845" "" "" "" 0 "RHEA:21141" "RHEA:21140" "INSK"
"MAR08976" "" "Kt3r" "" "" "" "KHte" "MNXR100939" "" "" "" 0 "" "" "KHte"
Expand Down