Adding Characterization to HADES

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: Hades
 Type: Package
 Title: Health Analytics Data-to-Evidence Suite
-Version: 1.8.0
+Version: 1.9.0
 Date: 2023-01-11
 Authors@R: c(
   person("Martijn", "Schuemie", , "[email protected]", role = c("aut", "cre")),
@@ -42,7 +42,8 @@ Imports:
   Hydra,
   IterativeHardThresholding,
   OhdsiShinyModules,
-  ResultModelManager
+  ResultModelManager,
+  Characterization
 Remotes:
   ohdsi/BigKnn,
   ohdsi/ROhdsiWebApi,
@@ -65,7 +66,8 @@ Remotes:
   ohdsi/DeepPatientLevelPrediction,
   ohdsi/CohortExplorer,
   ohdsi/OhdsiShinyModules,
-  ohdsi/ResultModelManager
+  ohdsi/ResultModelManager,
+  ohdsi/Characterization
 LazyData: false
 RoxygenNote: 7.2.0
 Encoding: UTF-8

NEWS.md

@@ -1,3 +1,10 @@
+HADES 1.9.0
+===========
+
+Changes
+
+- Adding Characterization to HADES
+
 HADES 1.8.0
 ===========
 

Rmd/packageStatuses.Rmd

@@ -21,6 +21,7 @@ The table below lists, for each of the HADES packages, the following details:
 | [Andromeda](https://github.com/OHDSI/Andromeda) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Andromeda?label=%20)](https://ohdsi.github.io/Andromeda/) | Adam Black | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/pulls) | [![Build Status](https://github.com/OHDSI/Andromeda/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Andromeda/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Andromeda/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Andromeda?branch=main) |
 | [BigKnn](https://github.com/OHDSI/BigKnn) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/BigKnn?label=%20)](https://ohdsi.github.io/BigKnn/) | Martijn Schuemie  | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/pulls) | [![Build Status](https://github.com/OHDSI/BigKnn/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/BigKnn/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/BigKnn/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/BigKnn?branch=main) |
 | [Capr](https://github.com/OHDSI/Capr) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Capr?label=%20)](https://ohdsi.github.io/Capr/) | Martin Lavallee | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/pulls) | [![Build Status](https://github.com/OHDSI/Capr/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Capr/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Capr/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Capr?branch=main) |
+| [Characterization](https://github.com/OHDSI/Characterization) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Characterization?label=%20)](https://ohdsi.github.io/Characterization/) | Jenna Reps | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Characterization?label=%20)](https://github.com/OHDSI/Characterization/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Characterization?label=%20)](https://github.com/OHDSI/Characterization/pulls) | [![Build Status](https://github.com/OHDSI/Characterization/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Characterization/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Characterization/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Characterization?branch=main) |
 | [CirceR](https://github.com/OHDSI/CirceR) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CirceR?label=%20)](https://ohdsi.github.io/CirceR/) | Chris Knoll | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/pulls) | [![Build Status](https://github.com/OHDSI/CirceR/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CirceR/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CirceR/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CirceR?branch=main) |
 | [CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortDiagnostics?label=%20)](https://ohdsi.github.io/CohortDiagnostics/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/pulls) | [![Build Status](https://github.com/OHDSI/CohortDiagnostics/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortDiagnostics/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortDiagnostics/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortDiagnostics?branch=main) |
 | [CohortExplorer](https://github.com/OHDSI/CohortExplorer) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortExplorer?label=%20)](https://ohdsi.github.io/CohortExplorer/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortExplorer?label=%20)](https://github.com/OHDSI/CohortExplorer/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortExplorer?label=%20)](https://github.com/OHDSI/CohortExplorer/pulls) | [![Build Status](https://github.com/OHDSI/CohortExplorer/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortExplorer/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortExplorer/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortExplorer?branch=main) |

Rmd/packages.Rmd

@@ -22,6 +22,10 @@ Below are the packages included in HADES. For each package a link is provided wi
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/DeepPatientLevelPrediction">DeepPatientLevelPrediction</a></h4>Performing patient level prediction using deep learning</br><a href="https://ohdsi.github.io/DeepPatientLevelPrediction">Learn more...</a></li>
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/EnsemblePatientLevelPrediction">EnsemblePatientLevelPrediction</a></h4>Building and validating ensemble patient-level predictive models.</br><a href="https://ohdsi.github.io/EnsemblePatientLevelPrediction">Learn more...</a></li>
 </ul>
+<h2 id="pkg_header">Characterization</h2>
+<ul id="pkg">
+<li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/Characterization">Characterization</a></h4>Various types of characterizations of a target and outcome cohort.</br><a href="https://ohdsi.github.io/Characterization">Learn more...</a></li>
+</ul>
 <h2 id="pkg_header">Cohort construction and evaluation</h2>
 <ul id="pkg">
 <li><h4><i class="fas  fa-cube "></i> <a href="https://ohdsi.github.io/Capr">Capr</a></h4>Develop and manipulate complex cohort definitions in R</br><a href="https://ohdsi.github.io/Capr">Learn more...</a></li>

Rmd/support.Rmd

@@ -20,6 +20,8 @@ Bug reports should be files using the issue tracker of the misbehaving package:
 
 - [Capr issue tracker](https://github.com/OHDSI/Capr/issues)
 
+- [Characterization issue tracker](https://github.com/OHDSI/Characterization/issues)
+
 - [CirceR issue tracker](https://github.com/OHDSI/CirceR/issues)
 
 - [CohortDiagnostics issue tracker](https://github.com/OHDSI/CohortDiagnostics/issues)

docs/developmentRoadmap.html

@@ -451,6 +451,8 @@ <h1>Package milestones</h1>
 <script>addMileStones('BigKnn')</script>
 <p id='Capr'/>
 <script>addMileStones('Capr')</script>
+<p id='Characterization'/>
+<script>addMileStones('Characterization')</script>
 <p id='CirceR'/>
 <script>addMileStones('CirceR')</script>
 <p id='CohortDiagnostics'/>