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Release notes for 0.13.1, plus an update to the list of authors. #1469

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May 7, 2024
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Release notes for 0.13.1, plus an update to the list of authors. #1469

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32 changes: 23 additions & 9 deletions doc/source/authors.rst
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Expand Up @@ -27,6 +27,7 @@ and may not be the current affiliation of a contributor.
* Kyler Brown
* Mikkel Elle Lepperød [11]
* C Daniel Meliza [12]
* Michael Denker [13, 29]
* Julia Sprenger [13, 6]
* Maximilian Schmidt [13]
* Johanna Senk [13]
Expand Down Expand Up @@ -65,20 +66,23 @@ and may not be the current affiliation of a contributor.
* Thomas Perret [25]
* Kyle Johnsen [26, 27]
* Zach McKenzie [28]
* Moritz Alexander Kern
* Moritz Alexander Kern [29]
* Joscha Schmiedt
* Daniel P. Crepeau
* Divyansh Gupta
* Nate Dolensek
* Philipp Hornauer
* Daniel P. Crepeau [30]
* Divyansh Gupta [31]
* Nate Dolensek [3]
* Philipp Hornauer [32]
* Robert Wolff
* Jules Lebert
* Jules Lebert [33]
* Benjamin Heasly
* Baptiste Grimaud
* Cody Baker
* Fernando J. Chaure
* Baptiste Grimaud [34]
* Cody Baker [24]
* Fernando J. Chaure [35]
* Filipe*github
* Matthias Klumpp
* Greg Knoll [36]
* Chris Halcrow [37]
* Szonja Weigl [24]

1. Centre de Recherche en Neuroscience de Lyon, CNRS UMR5292 - INSERM U1028 - Universite Claude Bernard Lyon 1
2. Unité de Neuroscience, Information et Complexité, CNRS UPR 3293, Gif-sur-Yvette, France
Expand Down Expand Up @@ -108,6 +112,16 @@ and may not be the current affiliation of a contributor.
26. Georgia Institute of Technology
27. Emory University
28. Harvard Medical School
29. Institute for Advanced Simulation (IAS-6), Forschungszentrum Jülich, Germany
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@apdavison could you change my affiliation 23. to "Allen Institute for Neural Dynamics, Seattle, WA, United States"
?

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Is affiliation 23 incorrect (i.e. you never worked there, or didn't contribute to Neo while you worked there), or is it that you moved?

If it's just that you moved, then I would add the Allen Institute as a second affiliation.

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and I guess we should add CatalystNeuro as a third affiliation in that case?

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Hi @apdavison

Yeah the institutution is correct, but I wonder whether we should keep all past institutions...What do you think?
IMO, it's better to keep the current institution(s), which for me are Allen Institute + CatalystNeuro

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Past institutions are potential copyright co-owners, so we need to keep track of them.

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If that's the case then I should probably add a second affiliation (I can do a PR myself soon). My MD/PhD will be from Harvard but my current lab is at Massachusetts General Hospital.

30. Dark Horse Neuro, Inc.
31. IST Austria
32. Department of Biosystems Science and Engineering, ETH Zürich, Basel, Switzerland
33. University College London
34. École Normale Supérieure Paris-Saclay
35. Institute of Biomedical Engineering, University of Buenos Aires, Argentina
36. Bernstein Center for Computational Neuroscience, Berlin, Germany
37. University of Edinburgh


If we've somehow missed you off the list we're very sorry - please let us know.

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1 change: 1 addition & 0 deletions doc/source/releases.rst
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Expand Up @@ -6,6 +6,7 @@ Release notes
.. toctree::
:maxdepth: 1

releases/0.13.1.rst
releases/0.13.0.rst
releases/0.12.0.rst
releases/0.11.1.rst
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42 changes: 42 additions & 0 deletions doc/source/releases/0.13.1.rst
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========================
Neo 0.13.1 release notes
========================

7th May 2024


This release of Neo contains a lot of improvements to code quality and documentation,
still with a focus on the planned 1.0 release,
together with, as usual, bug fixes and performance improvements in IO modules.

See all `pull requests`_ included in this release and the `list of closed issues`_.

Code and documentation quality
------------------------------

Particular thanks go to Zach McKenzie, who has checked, and rewritten if necessary, every docstring in the project,
to ensure they all have a consistent style.
Zach has also updated and improved the :doc:`../examples/index` in the Sphinx documentation.

The Neo code base contained a lot of ``assert``\s that should be exceptions.
These have all been replaced with appropriate exceptions (again by Zach McKenzie).
A new exception class, :class:`NeoReadWriteError` has been introduced.

Bug fixes and improvements in IO modules
----------------------------------------

Bug fixes and/or improvements have been made to :class:`SpikeGLXIO`, :class:`OpenEphysIO`, :class:`SpikeGadgetsIO`,
:class:`MaxwellIO`, :class:`AxonIO`, :class:`IntanIO`, :class:`TDTIO`, :class:`NeuralynxIO` and :class:`BlackrockIO`.


Acknowledgements
----------------

Thanks to Zach McKenzie, Andrew Davison, Heberto Mayorquin, Alessio Buccino, Samuel Garcia, Peter N. Steinmetz,
Aitor Morales-Gregorio, Greg Knoll, Chris Halcrow and Szonja Weigl for their contributions to this release.

.. generated with git shortlog --since=2024-02-02 -sne then checking Github for PRs merged since the last release but with commits before then

.. _`list of closed issues`: https://github.com/NeuralEnsemble/python-neo/issues?q=is%3Aissue+milestone%3A0.13.1+is%3Aclosed
.. _`pull requests`: https://github.com/NeuralEnsemble/python-neo/pulls?q=is%3Apr+is%3Aclosed+merged%3A%3E2024-02-02+milestone%3A0.13.1
.. _`examples gallery`: https://neo.readthedocs.io/en/latest/examples/
2 changes: 1 addition & 1 deletion pyproject.toml
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[project]
name = "neo"
version = "0.13.1.dev"
version = "0.13.1"
authors = [{name = "Neo authors and contributors"}]
description = "Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats"
readme = "README.rst"
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