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add 23sh1a
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@shaunwbell
shaunwbell committed Sep 23, 2024
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187 changes: 187 additions & 0 deletions erddap_xml/mule_erddap_dataset/ecofoci_moorings/datasets_Mooring_23sh1a_final.xml
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<dataset type="EDDTableFromNcFiles" datasetID="datasets_Mooring_23sh1a_final" active="true">
<reloadEveryNMinutes>10080</reloadEveryNMinutes>
<fileDir>/home/ecofoci_data/2023/Moorings/23sh1a/final_data_cf/</fileDir>
<fileNameRegex>.*\.nc</fileNameRegex>
<recursive>true</recursive>
<pathRegex>.*</pathRegex>
<metadataFrom>first</metadataFrom>
<standardizeWhat>0</standardizeWhat>
<sortedColumnSourceName>time</sortedColumnSourceName>
<sortFilesBySourceNames>time</sortFilesBySourceNames>
<fileTableInMemory>false</fileTableInMemory>\
<addAttributes>
<att name="cdm_data_type">Timeseries</att>
<att name="cdm_timeseries_variables">timeseries_id, latitude, longitude</att>
<att name="Conventions">COARDS, CF-1.6, ACDD-1.3</att>
<att name="infoUrl">https://pmel.noaa.gov/</att>
<att name="institution">NOAA/PMEL - EcoFOCI</att>
<att name="keywords">below, chemistry, chlor_fluorescence, chlorophyll, color, concentration, conductivity, data, density, depth, earth, Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Chlorophyll, fluorescence, Ocean Temperature &gt; Water Temperature, Earth Science &gt; Oceans &gt; Salinity/Density &gt; Conductivity, Earth Science &gt; Oceans &gt; Salinity/Density &gt; Salinity, electrical, in-situ, its, its-90, latitude, local, longitude, meters, ocean, oceans, practical, pss, pss-78, salinity, scale, science, sea, sea_water_electrical_conductivity, sea_water_practical_salinity, sea_water_temperature, seawater, situ, source, surface, temperature, time, water</att>
<att name="keywords_vocabulary">GCMD Science Keywords</att>
<att name="license">[standard]</att>
<att name="QC_indicator">final</att>
<att name="sourceUrl">(local files)</att>
<att name="standard_name_vocabulary">CF Standard Name Table v70</att>
<att name="subsetVariables">depth, timeseries_id, Instrument_Identifier, Serial_Number</att>
<att name="summary">QC'd (final) mooring data from 23SH-1A</att>
<att name="title">Mooring Data from 23SH-1A - final</att>
</addAttributes>
<dataVariable>
<sourceName>time</sourceName>
<destinationName>time</destinationName>
<dataType>double</dataType><addAttributes>
<att name="ioos_category">Time</att>
<att name="long_name">Time</att>
<att name="standard_name">time</att>
<att name="units">days since 1900-01-01T00:00:00Z</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>temperature</sourceName>
<destinationName>temperature</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">32.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="ioos_category">Temperature</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>conductivity</sourceName>
<destinationName>conductivity</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">40.0</att>
<att name="colorBarMinimum" type="double">30.0</att>
<att name="ioos_category">Salinity</att>
<att name="units">MMHo/cm</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>salinity</sourceName>
<destinationName>salinity</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">37.0</att>
<att name="colorBarMinimum" type="double">32.0</att>
<att name="ioos_category">Salinity</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>latitude</sourceName>
<destinationName>latitude</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">90.0</att>
<att name="colorBarMinimum" type="double">-90.0</att>
<att name="ioos_category">Location</att>
<att name="long_name">Latitude</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>longitude</sourceName>
<destinationName>longitude</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">180.0</att>
<att name="colorBarMinimum" type="double">-180.0</att>
<att name="ioos_category">Location</att>
<att name="long_name">Longitude</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>depth</sourceName>
<destinationName>depth</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">8000.0</att>
<att name="colorBarMinimum" type="double">-8000.0</att>
<att name="colorBarPalette">TopographyDepth</att>
<att name="ioos_category">Location</att>
<att name="units">m</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>chlor_fluorescence</sourceName>
<destinationName>chlorophyll_fluorescence</destinationName>
<dataType>double</dataType><addAttributes>
<att name="colorBarMaximum" type="double">30.0</att>
<att name="colorBarMinimum" type="double">0.03</att>
<att name="colorBarScale">Log</att>
<att name="ioos_category">Ocean Color</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>par</sourceName>
<destinationName>par</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Optical Properties</att>
<att name="generic_name">PAR</att>
<att name="standard_name">downwelling_photosynthetic_photon_spherical_irradiance_in_sea_water</att>
<att name="long_name">Photosynthetic Active Radiation</att>
<att name="units">uEin m-2 s-1</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>oxy_percentsat</sourceName>
<destinationName>oxygen_saturation</destinationName>
<dataType>float</dataType><addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">100.0</att>
<att name="colorBarMinimum" type="double">0.0</att>
<att name="ioos_category">Dissolved O2</att>
<att name="units">percent</att>
<att name="long_name">Percent Saturation of oxygen over air</att>
<att name="standard_name">fractional_saturation_of_oxygen_in_sea_water</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>oxy_conc_umkg</sourceName>
<destinationName>oxygen_concentration</destinationName>
<dataType>float</dataType><addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Dissolved O2</att>
<att name="units">&#181;micromole/kg</att>
<att name="long_name">concentration of oxygen in seawater</att>
<att name="standard_name">mole_concentration_of_dissolved_molecular_oxygen_in_sea_water</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>***fileName,^(\S*)\.nc,1</sourceName>
<destinationName>timeseries_id</destinationName>
<dataType>String</dataType><addAttributes>
<att name="ioos_category">Identifier</att>
<att name="cf_role">timeseries_id</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>global:InstrumentType</sourceName>
<destinationName>Instrument_Identifier</destinationName>
<dataType>String</dataType>
<addAttributes>
<att name="ioos_category">Identifier</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>global:InstrumentSerialNumber</sourceName>
<destinationName>Serial_Number</destinationName>
<dataType>String</dataType>
<addAttributes>
<att name="ioos_category">Identifier</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>global:WaterDepth</sourceName>
<destinationName>Water_Depth</destinationName>
<dataType>float</dataType>
<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Pressure</att>
<att name="standard_name">seafloor_depth</att>
<att name="units">dbar</att>
<att name="description">estimated seafloor depth at station by ek60 during cast</att>
</addAttributes>
</dataVariable>
</dataset>


190 changes: 190 additions & 0 deletions erddap_xml/mule_erddap_dataset_development/moorings/datasets_Mooring_23sh1a_preliminary.xml
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<dataset type="EDDTableFromAsciiFiles" datasetID="datasets_Mooring_23sh1a_preliminary" active="true">
<reloadEveryNMinutes>10080</reloadEveryNMinutes>

<fileDir>/home/ecofoci_data/2023/Moorings/23sh1a/initial_archive/</fileDir>
<fileNameRegex>.*\.csv</fileNameRegex>
<recursive>true</recursive>
<pathRegex>.*</pathRegex>
<metadataFrom>last</metadataFrom>
<charset>ISO-8859-1</charset>
<columnSeparator>,</columnSeparator>
<columnNamesRow>1</columnNamesRow>
<firstDataRow>2</firstDataRow>
<preExtractRegex />
<postExtractRegex />
<extractRegex />
<columnNameForExtract />
<sortedColumnSourceName>time</sortedColumnSourceName>
<sortFilesBySourceNames>time</sortFilesBySourceNames>
<fileTableInMemory>false</fileTableInMemory>


<addAttributes>
<att name="cdm_data_type">TimeSeries</att>
<att name="cdm_timeseries_variables">timeseries_id, latitude, longitude</att>
<att name="Conventions">COARDS, CF-1.6, ACDD-1.3</att>
<att name="History" />
<att name="infoUrl">https://pmel.noaa.gov/</att>
<att name="institution">NOAA/PMEL - EcoFOCI</att>
<att name="keywords">active, C_50, channel, chemistry, chlorophyll, color, concentration, concentration_of_chlorophyll_in_sea_water, conductivity, data, density, depth, depth2, dissolved, dissolved o2, earth, Earth Science &gt; Oceans &gt; Ocean Chemistry &gt; Chlorophyll, Earth Science &gt; Oceans &gt; Salinity/Density &gt; Conductivity, Earth Science &gt; Oceans &gt; Salinity/Density &gt; Salinity, electrical, Fch_906, fluorometer, Fvt_900, latitude, local, O2, O_65, ocean, ocean color, oceans, optical, optical properties, OST_62, oxygen, P_1, PAR_908, PAR_916, percent, photosynthetic, practical, pressure, properties, psu, radiation, S_41, salinity, sat, science, sea, sea_water_electrical_conductivity, sea_water_practical_salinity, seawater, source, T_20, temperature, time, umol, umol/kg, unit, V0_3333, volts, water, seacat, seabird</att>
<att name="keywords_vocabulary">GCMD Science Keywords</att>
<att name="license">[standard]</att>
<att name="sourceUrl">(local files)</att>
<att name="standard_name_vocabulary">CF Standard Name Table v70</att>
<att name="subsetVariables">depth, timeseries_id</att>
<att name="summary">Non-QC'd (preliminary) data from 23SH-1A</att>
<att name="title">Mooring Data from 23SH-1A preliminary data</att>
</addAttributes>
<dataVariable>
<sourceName>time</sourceName>
<destinationName>time</destinationName>
<dataType>String</dataType>

<addAttributes>
<att name="ioos_category">Time</att>
<att name="long_name">Datetime</att>
<att name="source_name">datetime</att>
<att name="standard_name">time</att>
<att name="units">yyyy-MM-dd HH:mm:ss</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>depth</sourceName>
<destinationName>depth</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">8000.0</att>
<att name="colorBarMinimum" type="double">-8000.0</att>
<att name="colorBarPalette">TopographyDepth</att>
<att name="ioos_category">Location</att>
<att name="units">m</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>latitude</sourceName>
<destinationName>latitude</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">90.0</att>
<att name="colorBarMinimum" type="double">-90.0</att>
<att name="ioos_category">Location</att>
<att name="long_name">Latitude</att>
<att name="standard_name">latitude</att>
<att name="units">degrees_north</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>longitude</sourceName>
<destinationName>longitude</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">180.0</att>
<att name="colorBarMinimum" type="double">-180.0</att>
<att name="ioos_category">Location</att>
<att name="long_name">Longitude</att>
<att name="standard_name">longitude</att>
<att name="units">degrees_east</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>temperature</sourceName>
<destinationName>temperature</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">20.0</att>
<att name="colorBarMinimum" type="double">-2.0</att>
<att name="ioos_category">Temperature</att>
<att name="long_name">Sea temperature in-situ ITS-90 scale</att>
<att name="standard_name">sea_water_temperature</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>pressure</sourceName>
<destinationName>pressure</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Sea Level</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>salinity</sourceName>
<destinationName>salinity</destinationName>
<dataType>float</dataType>
<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="colorBarMaximum" type="double">35.0</att>
<att name="colorBarMinimum" type="double">28.0</att>
<att name="ioos_category">Salinity</att>
<att name="standard_name">sea_water_practical_salinity</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>conductivity</sourceName>
<destinationName>conductivity</destinationName>
<dataType>float</dataType>
<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Salinity</att>
<att name="standard_name">sea_water_electrical_conductivity</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>chlor_fluorescence</sourceName>
<destinationName>chlorophyll_fluorescence</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="units">ugrams/l</att>
<att name="colorBarMaximum" type="double">30.0</att>
<att name="colorBarMinimum" type="double">0.03</att>
<att name="colorBarScale">Log</att>
<att name="ioos_category">Ocean Color</att>
<att name="standard_name">concentration_of_chlorophyll_in_sea_water</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>par</sourceName>
<destinationName>par</destinationName>
<dataType>float</dataType>

<addAttributes>
<att name="missing_value" type="float">-9999.0</att>
<att name="_FillValue" type="float">1.0e35</att>
<att name="ioos_category">Optical Properties</att>
<att name="generic_name">PAR</att>
<att name="standard_name">downwelling_photosynthetic_photon_spherical_irradiance_in_sea_water</att>
<att name="long_name">Photosynthetic Active Radiation</att>
<att name="units">uEin m-2 s-1</att>
</addAttributes>
</dataVariable>
<dataVariable>
<sourceName>***fileName,^(\S*)\.csv,1</sourceName>
<destinationName>timeseries_id</destinationName>
<dataType>String</dataType>

<addAttributes>
<att name="ioos_category">Identifier</att>
<att name="cf_role">timeseries_id</att>
</addAttributes>
</dataVariable>
</dataset>

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