Try a different order in GHA

LieberInstitute · Dec 13, 2024 · 6856214 · 6856214
1 parent ded9da6
commit 6856214
Showing 1 changed file with 6 additions and 10 deletions.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -179,23 +179,19 @@ jobs:
         continue-on-error: true
         shell: Rscript {0}
 
+      - name: Install development spatialLIBD
+        run: |
+          ## Install spatialLIBD from latest git commit
+          BiocManager::install("LieberInstitute/spatialLIBD", build_vignettes = FALSE)
+        shell: Rscript {0}
+
       - name: Install dependencies pass 2
         run: |
           ## Pass #2 at installing dependencies
           message(paste('****', Sys.time(), 'pass number 2 at installing dependencies: any remaining dependencies ****'))
           remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE)
         shell: Rscript {0}
 
-      - name: Install development spatialLIBD
-        run: |
-          ## Install spatialLIBD from latest git commit
-          BiocManager::install("LieberInstitute/spatialLIBD")
-
-          ## We also need the development version of BiocCheck (temporarily)
-          ## due to https://github.com/Bioconductor/BiocCheck/commit/481d8d1fa9c5ac32672d1119a058b8add2a933ed
-          BiocManager::install("Bioconductor/BiocCheck")
-        shell: Rscript {0}
-
       - name: Install BiocGenerics
         if:  env.has_RUnit == 'true'
         run: |