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Lieber Institute for Brain Development

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  1. spatialLIBD spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    R 87 19

  2. HumanPilot HumanPilot Public

    Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

    HTML 72 29

  3. recount3 recount3 Public

    Explore and download data from the recount3 project

    R 31 4

  4. 10xPilot_snRNAseq-human 10xPilot_snRNAseq-human Public

    10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC

    HTML 22 9

  5. spatialDLPFC spatialDLPFC Public

    spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

    HTML 19 3

  6. dotdotdot dotdotdot Public

    Example vignette for dotdotdot software

    MATLAB 18 11

Repositories

Showing 10 of 120 repositories
  • Human_DLPFC_Deconvolution Public
    LieberInstitute/Human_DLPFC_Deconvolution’s past year of commit activity
    Roff 3 0 0 0 Updated Dec 18, 2024
  • spatialLIBD Public

    Code for the spatialLIBD R/Bioconductor package and shiny app

    LieberInstitute/spatialLIBD’s past year of commit activity
    R 87 19 20 1 Updated Dec 16, 2024
  • DeconvoBuddies Public

    Helper Functions for LIBD Deconvolution

    LieberInstitute/DeconvoBuddies’s past year of commit activity
    R 3 1 6 0 Updated Dec 16, 2024
  • recount3-docs Public

    Documentation for all things related to `recount3`

    LieberInstitute/recount3-docs’s past year of commit activity
    R 2 1 0 0 Updated Dec 13, 2024
  • visiumStitched Public

    R package containing functions useful for stitching Visium capture areas. Related to the example human brain data described at http://research.libd.org/visiumStitched_brain/.

    LieberInstitute/visiumStitched’s past year of commit activity
    R 1 0 2 0 Updated Dec 13, 2024
  • GenomicState Public

    Build and access GenomicState objects for use with derfinder tools from sources like Gencode

    LieberInstitute/GenomicState’s past year of commit activity
    R 0 0 0 0 Updated Dec 12, 2024
  • jaffelab Public

    R package with commonly used functions by the Jaffe lab

    LieberInstitute/jaffelab’s past year of commit activity
    R 7 3 4 0 Updated Dec 12, 2024
  • megadepth Public

    R interface to megadepth: BigWig and BAM related utilities

    LieberInstitute/megadepth’s past year of commit activity
    R 11 2 6 0 Updated Dec 12, 2024
  • SPEAQeasy-example Public

    Full length example for SPEAQeasy

    LieberInstitute/SPEAQeasy-example’s past year of commit activity
    Shell 1 0 0 0 Updated Dec 11, 2024
  • spatial_DG_lifespan Public

    Spatial transcriptomics (Visium) in dentate gyrus of hippocampus over the lifespan

    LieberInstitute/spatial_DG_lifespan’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 11, 2024
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