Update QC col in test

LieberInstitute · Jun 10, 2024 · e13ed4d · e13ed4d
1 parent 943f2f7
commit e13ed4d
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/tests/testthat/test-add_qc_metrics.R b/tests/testthat/test-add_qc_metrics.R
@@ -6,6 +6,9 @@ test_that(
         # run metrics spe
         spe_qc <- add_qc_metrics(spe)
         expect_equal(ncol(spe), ncol(spe_qc)) ## same number of spots
-        expect_equal(ncol(colData(spe)) + 8, ncol(colData(spe_qc))) ## add 8 QC cols to colData
+        expect_equal(ncol(colData(spe)) + 7, ncol(colData(spe_qc))) ## add 7 QC cols to colData
+        # [1] "scran_discard"                   "scran_low_lib_size"              "scran_low_n_features"           
+        # [4] "scran_high_subsets_Mito_percent" "edge_spot"                       "edge_distance"                  
+        # [7] "scran_low_lib_size_edge" 
     }
 )