Code

proposed v1.9.1 updates#45

Code

Merged

Nick-Eagles merged 16 commits intodevelLieberInstitute/qsvaR:develfrom gdevLieberInstitute/qsvaR:gdevCopy head branch name to clipboardOct 9, 2024

+359-291

Commits

Commits on Sep 16, 2024

• simplify/improve ENSEMBL base transcript name matching

  gpertea

  committed
  81723a2

Commits on Sep 22, 2024

• filtering the example rse_tx for the vignette

  gpertea

  committed
  5b1f5d7

• fix vignette build issue

  gpertea

  committed
  2012317

• Age>17 and expression cutoff filter from the start

  gpertea

  committed
  63abfee

• cleanup some comments from vignette

  gpertea

  committed
  4294381

• cleanup comments from vignette, add the new functions

  gpertea

  committed
  d570e25

• fix example rse_tx naming, tests, docs

  gpertea

  committed
  c7e6095

• removed confusing references to covComb_tx_deg when used as example RSE

  gpertea

  committed
  c2b33fb

• still fixing covComb_tx_deg references

  gpertea

  committed
  9e328f7

• stubborn ci/cd warning

  gpertea

  committed
  c700acb

• why push also Rd files if roxygen is building them anyway

  gpertea

  committed
  e5f8910

Commits on Sep 24, 2024

• added DEqual option to use custom deg_tstats, other plot options

  gpertea

  committed
  7cdb54c

• fix code paste error

  gpertea

  committed
  03d6beb

• added back the generated documentation, the build system is not that smart

  gpertea

  committed
  ddbe0fc

• fixed docs typo

  gpertea

  committed
  5cb690d

Commits on Sep 26, 2024

• reversed workflow changes

  gpertea

  committed
  fd68d34