Remove is_gencode = TRUE in the function

LieberInstitute · Jan 5, 2024 · 1e1233f · 1e1233f
1 parent 0c1f7dc
commit 1e1233f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/getDegTx.R b/R/getDegTx.R
@@ -33,7 +33,7 @@
 #' @examples
 #' getDegTx(covComb_tx_deg)
 #' stopifnot(mean(rowMeans(assays(covComb_tx_deg)$tpm)) > 1)
-getDegTx <- function(rse_tx, type = c("cell_component", "standard", "top1500"), sig_transcripts = select_transcripts(type), assayname = "tpm", is_gencode = TRUE) {
+getDegTx <- function(rse_tx, type = c("cell_component", "standard", "top1500"), sig_transcripts = select_transcripts(type), assayname = "tpm") {
 
   type = arg_match(type)