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fix ape link and add r-universe link
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KlausVigo committed Apr 3, 2024
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Expand Up @@ -12,6 +12,8 @@ phangorn is a package for phylogenetic reconstruction and analysis in the R lang
You can install
- the latest released version `install.packages("phangorn")`
- the latest development version `remotes::install_github("KlausVigo/phangorn")`
- [r-universe](https://r-universe.dev/) kindly provides binaries for Windows,
Linux and OS X of the development version [here](https://klausvigo.r-universe.dev/phangorn#).

To install the development version you may need to install the Biostrings and seqLogo package from bioconductor first:
```
Expand All @@ -20,7 +22,8 @@ if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install(c("Biostrings", "seqLogo"))
```
Also the development version usually depends on the latest ape development
version and information to download can be found [here](http://ape-package.ird.fr/ape_installation.html).
version and information to download can be found
[here](https://emmanuelparadis.github.io/ape_installation.html).
Additionally you may need to install on windows [Rtools](https://cran.r-project.org/bin/windows/Rtools/) and on mac [XCode](https://developer.apple.com/xcode/)
and [GFortran](https://gcc.gnu.org/wiki/GFortranBinaries).

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