Code

Dev branch to merge back#8

Code

Merged

jonathanhhb merged 31 commits intomainInstituteforDiseaseModeling/emodpy-typhoid:mainfrom dev_branch_to_merge_backInstituteforDiseaseModeling/emodpy-typhoid:dev_branch_to_merge_backCopy head branch name to clipboardOct 2, 2023

+2,106-111

Commits

Commits on Sep 14, 2023

• Cache latest working example with 2-D sweep.

  

  Jonathan Bloedow

  committed
  4224975

• Making versions of emod-typhoid and emodpy really specific for now in this branch.

  

  Jonathan Bloedow

  committed
  897b586

• Adding Feb162019 config and campaign files.

  

  Jonathan Bloedow

  committed
  c65b0a8

• Point manifest to 2018 files.

  

  Jonathan Bloedow

  committed
  b89024b

• example.py uses new path param in cache_experiment_metadata_in_sql function.

  

  Jonathan Bloedow

  committed
  728c96b

Commits on Sep 20, 2023

• Populate PrevalenceDistributionXXX keys in demographics since older binaries look for that unconditionally.

  

  Jonathan Bloedow

  committed
  79585fa

• All-important __init__.py might have been missing still.

  

  Jonathan Bloedow

  committed
  37a28ac

• Added requirements.txt for 2018 model.

  

  Jonathan Bloedow

  committed
  6fe9c48

• Bump to 0.0.3

  

  Jonathan Bloedow

  committed
  1b3859b

• Update start_here to work natively with 2018 model.

  

  Jonathan Bloedow

  committed
  ec2d7a6

• Show how to grab csv report.

  

  Jonathan Bloedow

  committed
  cad0a8c

Commits on Sep 21, 2023

• add pakistan demographics

  AKraay-IDM

  authored
  3399ed8

Commits on Sep 22, 2023

• Merge pull request #2 from InstituteforDiseaseModeling/main

  Show description for cfcbf72
  jonathanhhb

  authored
  cfcbf72

Commits on Sep 25, 2023

• Rev'd emod-api and emod-typhoid to enable use of scheduled typhoid vaccine interventions with 2018 branch model.

  

  Jonathan Bloedow

  committed
  3a2a0ca

• Make vaccine efficacy profile functional.

  

  Jonathan Bloedow

  committed
  1c7156d

• Make vaccine efficacy profile functional.

  

  Jonathan Bloedow

  committed
  7c52617

Commits on Sep 27, 2023

• Pass through waning/duration params.

  

  Jonathan Bloedow

  committed
  de10aa8

Commits on Sep 28, 2023

• Don't want that file in version control.

  

  Jonathan Bloedow

  committed
  aa60096

• Adding comments during PR review.

  

  Jonathan Bloedow

  committed
  5670fcd

• Removing dead code during PR review.

  

  Jonathan Bloedow

  committed
  7f05a8e

• Dev branch to merge, sans branch changes to keep but not merge.

  

  Jonathan Bloedow

  committed
  0c0b0d6

• Added doc strings from ChatGPT for TV.

  

  Jonathan Bloedow

  committed
  e66a13a

• Merge remote-tracking branch 'origin/main' into dev_branch_to_merge_back

  

  Jonathan Bloedow

  committed
  b50a01e

• Changed some remaining malaria references (from template) to typhiod.

  

  Jonathan Bloedow

  committed
  1e51ba2

• Changed some remaining malaria references (from template) to typhiod.

  

  Jonathan Bloedow

  committed
  8578161

• More whitespace for sphinx/RTD/etc.

  

  Jonathan Bloedow

  committed
  66b3208

• Less whitespace for sphinx/RTD/etc.

  

  Jonathan Bloedow

  committed
  84f1655

• Added html_css_files entry to conf.py for docs.

  

  Jonathan Bloedow

  committed
  8fe80d2

• updated Sphinx config to correctly apply css, corrected typos in .gitignore and demo docstring

  JSchripsema-IDM

  committed
  efd6edd

• Merge pull request #11 from JSchripsema-IDM/dev_branch_to_merge_back

  Show description for 09a7fcd
  jonathanhhb

  authored
  09a7fcd

Commits on Oct 2, 2023

• Fixed bug caught by Sharon where new_intervention_as_file wasnt passing start_day by name and thus correctly.

  

  Jonathan Bloedow

  committed
  2b264a4