Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dev branch to merge back #8

Merged
merged 31 commits into from
Oct 2, 2023
Merged

Dev branch to merge back #8

merged 31 commits into from
Oct 2, 2023

Conversation

jonathanhhb
Copy link
Collaborator

No description provided.

Jonathan Bloedow and others added 23 commits September 13, 2023 20:36
Cache latest working example with 2-D sweep.
4224975
Making versions of emod-typhoid and emodpy really specific for now in…
897b586 
… this branch.
Adding Feb162019 config and campaign files.
c65b0a8
Point manifest to 2018 files.
b89024b
example.py uses new path param in cache_experiment_metadata_in_sql fu…
728c96b 
…nction.
Populate PrevalenceDistributionXXX keys in demographics since older b…
79585fa 
…inaries look for that unconditionally.
All-important __init__.py might have been missing still.
37a28ac
Added requirements.txt for 2018 model.
6fe9c48
Bump to 0.0.3
1b3859b
Update start_here to work natively with 2018 model.
ec2d7a6
Show how to grab csv report.
cad0a8c
@AKraay-IDM
add pakistan demographics
3399ed8
@jonathanhhb
Merge pull request #2 from InstituteforDiseaseModeling/main
cfcbf72 
Add demographics file
Rev'd emod-api and emod-typhoid to enable use of scheduled typhoid va…
3a2a0ca 
…ccine interventions with 2018 branch model.
Make vaccine efficacy profile functional.
1c7156d
Make vaccine efficacy profile functional.
7c52617
Pass through waning/duration params.
de10aa8
Don't want that file in version control.
aa60096
Adding comments during PR review.
5670fcd
Removing dead code during PR review.
7f05a8e
Dev branch to merge, sans branch changes to keep but not merge.
0c0b0d6
Added doc strings from ChatGPT for TV.
e66a13a
Merge remote-tracking branch 'origin/main' into dev_branch_to_merge_back
b50a01e
@github-actions
Copy link

'->> Link to your documents from Sep 28-07:49.30'

@github-actions
Copy link

'->> Link to your documents from Sep 28-08:00.46'

@github-actions
Copy link

'->> Link to your documents from Sep 28-08:11.07'

@github-actions
Copy link

'->> Link to your documents from Sep 28-08:23.06'

@github-actions
Copy link

'->> Link to your documents from Sep 28-08:22.49'

@github-actions
Copy link

'->> Link to your documents from Sep 28-10:26.55'

JSchripsema-IDM and others added 2 commits September 28, 2023 12:53
@JSchripsema-IDM
updated Sphinx config to correctly apply css, corrected typos in .git…
efd6edd 
…ignore and demo docstring
@jonathanhhb
Merge pull request #11 from JSchripsema-IDM/dev_branch_to_merge_back
09a7fcd 
updated Sphinx config to correctly apply css, corrected typos in .git…
@github-actions
Copy link

'->> Link to your documents from Sep 28-14:05.57'

@shchen-idmod
Copy link
Collaborator

In typhoid_vaccine.py:

def new_intervention_as_file( camp, start_day, filename=None ):
    import emod_api.campaign as camp
    camp.add( new_triggered_intervention( camp, start_day ), first=True )

start_day above should be start_day=start_day. Other wise, start_day will become efficacy in new_triggered_intervention

@jonathanhhb jonathanhhb merged commit f9cdf51 into main Oct 2, 2023
2 checks passed
@jonathanhhb jonathanhhb deleted the dev_branch_to_merge_back branch October 2, 2023 14:10
@github-actions
Copy link

github-actions bot commented Oct 2, 2023

'->> Link to your documents from Oct 02-07:12.46'

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
4 participants
@jonathanhhb @shchen-idmod @AKraay-IDM @JSchripsema-IDM