Don't consume software_versions_yaml channel for MultiQC. Update dock…

…er image for MultiQC version.
Gregor-Mendel-Institute · Aug 30, 2017 · f491c8a · f491c8a
1 parent 1d9344c
commit f491c8a
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diff --git a/Dockerfile b/Dockerfile
@@ -105,4 +105,4 @@ RUN mkdir /opt/MethylDackel && \
     rm /opt/MethylDackel/MethylDackel.zip
 
 # Install MultiQC
-RUN pip install git+https://github.com/ewels/MultiQC.git
+RUN pip install multiqc
diff --git a/bismark.nf b/bismark.nf
@@ -522,7 +522,7 @@ process multiqc {
     file ('bismark/*') from bismark_reports_results.collect()
     file ('bismark/*') from bismark_summary_results.collect()
     file ('qualimap/*') from qualimap_results.collect()
-    file ('software_versions/*') from software_versions_yaml
+    file ('software_versions/*') from software_versions_yaml.collect()
 
     output:
     file "*_report.html" into multiqc_report