Merge pull request #5 from ewels/master

New logo, onComplete e-mail bugfix

README.md

@@ -1,12 +1,13 @@
-# NGI-MethylSeq
-Methylation (BS-Seq) Best Practice pipeline for bisulfite sequencing data analysis at
-the [National Genomics Infastructure](https://ngisweden.scilifelab.se/)
-at [SciLifeLab Stockholm](https://www.scilifelab.se/platforms/ngi/), Sweden.
-
-# UNDER DEVELOPMENT
-This pipeline is currently under active development and has very little in the way of testing.
-There's a pretty good chance that it won't run. Any help debugging is very welcome! Please
-fork, make changes and submit a pull request.
+# ![NGI-MethylSeq](docs/images/NGI-MethylSeq_logo.png)
+
+> # UNDER DEVELOPMENT
+> This pipeline is currently under active development and has very little in the way of testing. You may well have problems running it. Any help debugging is very welcome! Please fork, make changes and submit a pull request.
+
+**NGI-MethylSeq** is a bioinformatics best-practice analysis pipeline used for Methylation (BS-Seq) data analysis at the [National Genomics Infastructure](https://ngisweden.scilifelab.se/) at [SciLifeLab Stockholm](https://www.scilifelab.se/platforms/ngi/), Sweden.
+
+The pipeline uses [Nextflow](https://www.nextflow.io), a bioinformatics workflow tool. It pre-processes raw data from FastQ inputs, aligns the reads and performs extensive quality-control on the results.
+
+This pipeline is primarily used with a SLURM cluster on the Swedish [UPPMAX systems](https://www.uppmax.uu.se). However, the pipeline should be able to run on any system that Nextflow supports. We have done some limited testing using Docker and AWS, and the pipeline comes with some configuration for these systems. See the [installation docs](docs/installation.md) for more information.
 
 ## Pipeline Results
 See the [pipeline documentation](docs/README.md) for explanations of