Added conda-forge::openjdk to conda env for FastQC

Gregor-Mendel-Institute · Mar 11, 2018 · 7f80174 · 7f80174
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diff --git a/Dockerfile b/Dockerfile
@@ -1,4 +1,5 @@
 FROM continuumio/miniconda
+MAINTAINER Phil Ewels <[email protected]>
 LABEL authors="[email protected]" \
     description="Docker image containing all requirements for the nf-core/MethylSeq pipeline"
 

diff --git a/environment.yml b/environment.yml
@@ -1,9 +1,13 @@
+# You can use this file to create a conda environment for this pipeline:
+#   conda env create -f environment.yml
 name: nfcore-methylseq
 channels:
+  - defaults
   - conda-forge
   - bioconda
 dependencies:
   # Default bismark
+  - conda-forge::openjdk # Needed for FastQC docker - see bioconda/bioconda-recipes#5026
   - fastqc=0.11.5
   - trim-galore=0.4.5
   - samtools=1.7