Merge branch 'iss76' into dev

.editorconfig

@@ -0,0 +1,25 @@
+# EditorConfig is awesome: http://EditorConfig.org
+
+# top-most EditorConfig file
+root = true
+
+# Unix-style newlines with a newline ending every file
+[*]
+end_of_line = lf
+insert_final_newline = true
+trim_trailing_whitespace = true
+# Set default charset
+charset = utf-8
+
+# Matches multiple files with brace expansion notation
+
+# 4 space indentation
+[*.{py,java,r,R}]
+indent_size = 4
+
+# 2 space indentation
+[*.{js,json,yml,html,xml}]
+indent_size = 2
+
+[*.{md,Rmd}]
+trim_trailing_whitespace = false

.travis.yml

@@ -10,7 +10,7 @@ env:
   global:
     - PREFIX=gtcg/xenon
     - BAM=data/test.bam
-    - CHROM="12 22"
+    - SEQIDS="12,22"
   matrix:
     - PORT=10022 IMG=gridengine TAG=6 SCH=local
     - PORT=10023 IMG=gridengine TAG=6 SCH=gridengine
@@ -23,4 +23,4 @@ install:
   - docker exec -t $SCH chown -R xenon:xenon /home/xenon
   - docker exec -u xenon -t $SCH ./install.sh
 script:
-  - docker exec -u xenon -t $SCH ./run.sh $SCH $BAM $CHROM
+  - docker exec -u xenon -t $SCH ./run.sh $SCH $BAM $SEQIDS