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21 Open 59 Closed
21 Open 59 Closed
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Issues list

structure
#103 opened Jun 10, 2022 by brentp
3 of 6 tasks
ggplot not included in dependencies
#102 opened May 12, 2022 by brentp
@lsantuari
INVersions missing from the BEDPE output bug
#98 opened Mar 21, 2022 by arnikz
Use GitHub Container Registry instead of Docker Hub enhancement
#96 opened Feb 3, 2022 by arnikz
@arnikz
Major refactoring code enhancement high priority
#95 opened Feb 3, 2022 by lsantuari
5 of 9 tasks
@lsantuari
Add BayesSearchCV for nested cross-validation code
#92 opened Apr 12, 2021 by lsantuari
@lsantuari
Add scripts to generate figures data
#91 opened Mar 4, 2021 by lsantuari
@lsantuari
Use GitHub Actions instead of Travis CI
#86 opened Dec 8, 2020 by arnikz
@arnikz
Post-proces SURVIVOR output with vcf2bedpe.R question
#82 opened Dec 1, 2020 by arnikz
@lsantuari
6
Refactor merge_sv_calls.R code
#81 opened Nov 30, 2020 by lsantuari 0.1.0
@arnikz
1
Running sv-channels without training code enhancement
#78 opened Nov 25, 2020 by lsantuari 0.1.0
@arnikz
5
Windown labeling fails on CTX SV type bug code
#77 opened Nov 24, 2020 by arnikz 0.1.0
8
Simulated data release on Zenodo data
#72 opened Nov 19, 2020 by lsantuari
2 tasks
0.1.0
@arnikz @lsantuari
2
Add REF/HOM/HET subclasses for each SVTYPE code high priority
#69 opened Nov 4, 2020 by lsantuari
3 tasks
@lsantuari
1
Update workflow graph doc
#68 opened Sep 3, 2020 by lsantuari 0.1.0
@lsantuari
Enable testing channel importance by channel zeroing and permutation code enhancement
#52 opened Apr 7, 2020 by lsantuari
@lsantuari
Use pysam fetch instead of pileup in snv.py code enhancement
#49 opened Apr 3, 2020 by lsantuari
@lsantuari
Replace scripts with Snakefile code enhancement
#46 opened Apr 1, 2020 by arnikz
2 tasks
Refactor code base code enhancement
#44 opened Apr 1, 2020 by arnikz
Add notebooks to Binder code enhancement
#41 opened Mar 27, 2020 by arnikz
3 tasks
0.1.0
@arnikz
1
Add list of regions to exclude for the negative set code enhancement
#10 opened Dec 18, 2019 by lsantuari
@lsantuari
ProTip! Find all open issues with in progress development work with linked:pr.