Merge branch 'siibra-1.0' of github.com:FZJ-INM1-BDA/siibra-tutorials…

… into siibra-1.0
FZJ-INM1-BDA · Mar 12, 2024 · ea227a8 · ea227a8
2 parents c6f3496 + 702bbf8
commit ea227a8
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Showing 6 changed files with 11 additions and 10 deletions.
diff --git a/01-BasicConcepts.ipynb b/01-BasicConcepts.ipynb
@@ -24,7 +24,7 @@
    "outputs": [],
    "source": [
     "import siibra\n",
-    "assert siibra.__version__ == \"1.0a01\"\n",
+    "assert siibra.__version__ >= \"1.0a02\"\n",
     "import os\n",
     "import matplotlib\n",
     "%matplotlib notebook"
@@ -288,7 +288,8 @@
    "outputs": [],
    "source": [
     "from nilearn import plotting\n",
-    "plotting.plot_stat_map(mpm.fetch(), title=f\"{mpm.parcellation.name} (merged fragments)\")"
+    "cmap = mpm.get_colormap()\n",
+    "plotting.plot_roi(mpm.fetch(), cmap=cmap, title=mpm.parcellation.name)"
    ]
   },
   {
@@ -520,9 +521,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "area44l = julichbrain.get_region('44 right')\n",
-    "mask = area44l.get_regional_map('bigbrain')\n",
-    "mask.boundingbox"
+    "area44r = julichbrain.get_region(\"44 right\")\n",
+    "bbox = area44r.get_bounding_box(\"bigbrain\")\n",
+    "bbox"
    ]
   },
   {

diff --git a/02-DataFeatures.ipynb b/02-DataFeatures.ipynb
@@ -22,7 +22,7 @@
    "outputs": [],
    "source": [
     "import siibra\n",
-    "assert siibra.__version__ == \"1.0a01\""
+    "assert siibra.__version__ >= \"1.0a02\""
    ]
   },
   {

diff --git a/03-ProbabilisticAssignment.ipynb b/03-ProbabilisticAssignment.ipynb
@@ -7,7 +7,7 @@
    "outputs": [],
    "source": [
     "import siibra\n",
-    "assert siibra.__version__ == \"1.0a01\"\n",
+    "assert siibra.__version__ >= \"1.0a02\"\n",
     "from nilearn import plotting\n",
     "import matplotlib.pyplot as plt\n",
     "%matplotlib notebook"

diff --git a/04-DifferentialGeneExpressions.ipynb b/04-DifferentialGeneExpressions.ipynb
@@ -29,7 +29,7 @@
    "outputs": [],
    "source": [
     "import siibra, siibra_jugex\n",
-    "assert siibra.__version__ == \"1.0a01\"\n",
+    "assert siibra.__version__ >= \"1.0a02\"\n",
     "assert siibra_jugex.__version__ >= \"1.2\""
    ]
   },

diff --git a/05-CombinedWorkflow.ipynb b/05-CombinedWorkflow.ipynb
@@ -19,7 +19,7 @@
    "outputs": [],
    "source": [
     "import siibra\n",
-    "assert siibra.__version__ == \"1.0a01\"\n",
+    "assert siibra.__version__ >= \"1.0a02\"\n",
     "import matplotlib.pyplot as plt\n",
     "%matplotlib notebook"
    ]

diff --git a/HIBALL-winterschool-2023.ipynb b/HIBALL-winterschool-2023.ipynb
@@ -16,7 +16,7 @@
    "outputs": [],
    "source": [
     "import siibra\n",
-    "assert siibra.__version__ == \"1.0a01\"\n",
+    "assert siibra.__version__ >= \"1.0a02\"\n",
     "import matplotlib\n",
     "%matplotlib notebook\n",
     "\n",