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@FZJ-INM1-BDA

Big Data Analytics group

Big Data Analytics group at the Institute of Neuroscience and Medicine (INM-1), Forschungszentrum Juelich

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  1. celldetection celldetection Public

    Scalable Instance Segmentation using PyTorch & PyTorch Lightning.

    Python 127 21

  2. siibra-python siibra-python Public

    Software interfaces for interacting with brain atlases - Python client

    Python 48 10

  3. siibra-explorer siibra-explorer Public

    TypeScript 22 4

  4. pytiff pytiff Public

    Cython 11 13

  5. siibra-tutorials siibra-tutorials Public

    Tutorials for the siibra toolsuite - software interface for brain atlases.

    Jupyter Notebook 9 1

  6. neurips22-cell-seg neurips22-cell-seg Public

    Python 7

Repositories

Showing 10 of 37 repositories
  • siibra-tutorials Public

    Tutorials for the siibra toolsuite - software interface for brain atlases.

    FZJ-INM1-BDA/siibra-tutorials’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 1 1 0 Updated Dec 23, 2024
  • siibra-python Public

    Software interfaces for interacting with brain atlases - Python client

    FZJ-INM1-BDA/siibra-python’s past year of commit activity
    Python 48 Apache-2.0 10 56 6 Updated Dec 20, 2024
  • siibra-configurations Public
    FZJ-INM1-BDA/siibra-configurations’s past year of commit activity
    Python 1 1 21 4 Updated Dec 20, 2024
  • siibra-explorer Public
    FZJ-INM1-BDA/siibra-explorer’s past year of commit activity
    TypeScript 22 Apache-2.0 4 47 8 Updated Dec 19, 2024
  • siibra-api Public
    FZJ-INM1-BDA/siibra-api’s past year of commit activity
    Python 4 Apache-2.0 3 6 0 Updated Dec 19, 2024
  • siibralab Public

    Matlab interface to the siibra toolsuite

    FZJ-INM1-BDA/siibralab’s past year of commit activity
    MATLAB 5 Apache-2.0 2 6 3 Updated Dec 18, 2024
  • voluba Public

    Browser based tool for interactive alignment of high-resolution volumes of interest to 3D reference brain models

    FZJ-INM1-BDA/voluba’s past year of commit activity
    Vue 4 Apache-2.0 0 30 3 Updated Dec 11, 2024
  • celldetection Public

    Scalable Instance Segmentation using PyTorch & PyTorch Lightning.

    FZJ-INM1-BDA/celldetection’s past year of commit activity
    Python 127 Apache-2.0 21 14 0 Updated Dec 6, 2024
  • cl-3d Public

    Contrastive learning using 3D context of stacked brain sections.

    FZJ-INM1-BDA/cl-3d’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Nov 27, 2024
  • siibra-jugex Public

    Differential analysis of gene expressions in human brain regions

    FZJ-INM1-BDA/siibra-jugex’s past year of commit activity
    Python 0 Apache-2.0 1 2 2 Updated Nov 11, 2024
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