simplify #1

01-BasicConcepts.ipynb

@@ -7,16 +7,6 @@
     "## Import siibra"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "# first off, update siibra to latest release\n",
-    "!pip install -U siibra"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -25,24 +15,12 @@
    "source": [
     "import siibra\n",
     "from packaging.version import Version\n",
-    "assert Version(siibra.__version__) >= Version('1.0a08')\n",
+    "assert Version(siibra.__version__) >= Version('1.0a11')\n",
     "import os\n",
     "import matplotlib\n",
     "%matplotlib inline"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": [
-    "# We populate the cache with common data items here, so we need not wait later on.\n",
-    "# This is not usually needed - siibra fetches data only as needed.\n",
-    "with siibra.QUIET:\n",
-    "    siibra.warm_cache()"
-   ]
-  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -191,7 +169,7 @@
    "outputs": [],
    "source": [
     "julich_mpm = julichbrain.get_map(space=siibra.spaces.MNI_152_ICBM_2009C_NONLINEAR_ASYMMETRIC)\n",
-    "mpm"
+    "julich_mpm"
    ]
   },
   {
@@ -388,7 +366,7 @@
     "To work with full resolution data, we typically fetch volumes of interest only.\n",
     "`siibra` represents these as bounding boxes (`siibra.locations.BoundingBox`).\n",
     "Bounding boxes are one type of locations provided by `siibra`, and all locations are uniquely associated to a reference space.\n",
-    "We construct a bounding box in BigBrain space by using the min and max point (-3.979, -61.256, 3.906) and (5.863, -55.356, -2.487):"
+    "We construct a bounding box in BigBrain space by using the min and max point (-2.979, -61.256, 1.906) and (2.863, -57.356, -2.087):"
    ]
   },
   {
@@ -398,8 +376,8 @@
    "outputs": [],
    "source": [
     "voi = siibra.locations.BoundingBox(\n",
-    "    (-3.979, -61.256, 3.906),\n",
-    "    (5.863, -55.356, -2.487),\n",
+    "    (-2.979, -61.256, 1.906),\n",
+    "    (2.863, -57.356, -2.087),\n",
     "    space='bigbrain'\n",
     ")"
    ]
@@ -457,6 +435,13 @@
     "mask = layermap.fetch(resolution_mm=0.16, voi=voi, fragment='left')\n",
     "plotting.view_img(mask, bg_img=bigbrainchunk, opacity=.1, symmetric_cmap=False)"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {