ci: add test suite #1
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name: '[Test] Test siibra-tutorials' | |
on: | |
push: | |
branches: ["**"] | |
workflow_dispatch: | |
inputs: | |
siibra_python_branch: | |
description: 'siibra-python branch to use' | |
required: false | |
default: 'main' | |
type: string | |
jobs: | |
test_tutorials: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: checkout siibra-python | |
uses: actions/checkout@v4 | |
with: | |
repository: FZJ-INM1-BDA/siibra-python | |
path: siibra-python-${{ github.run_id }}-${{ github.run_number }} | |
fetch-depth: 1 | |
clean: True | |
ref: ${{ inputs.siibra_python_branch }} | |
- name: move siibra-python one up from workspace | |
run: mv siibra-python-${{ github.run_id }}-${{ github.run_number }} ../siibra-python | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install -U . | |
pip install -r requirements.txt | |
pip install siibra_jugex | |
pip install matplotlib | |
pip install pytest nbmake | |
- name: Install siibra-python testing requirements | |
run: | | |
pip install -r ../siibra-python/requirements-test.txt | |
pip install -r ../siibra-python/requirements.txt | |
- name: Test tutorial notebooks with nbmake | |
run: pytest --nbmake --nbmake-timeout=1200 ./siibra-tutorials-${{ github.run_id }}-${{ github.run_number }} |