Skip to content

Commit

Permalink
Remove Allen API down warning from examples
Browse files Browse the repository at this point in the history
  • Loading branch information
AhmetNSimsek committed Jan 9, 2025
1 parent 835d598 commit 8d68cef
Show file tree
Hide file tree
Showing 2 changed files with 0 additions and 13 deletions.
7 changes: 0 additions & 7 deletions examples/03_data_features/000_matchings.py
Original file line number Diff line number Diff line change
Expand Up @@ -138,12 +138,5 @@
# For example, the gene expressions retrieved from the Allen atlas are linked by the coordinate
# For example, the gene expressions retrieved from the Allen atlas are linked by the coordinate
# of their tissue probes in MNI space. If a coordinate is inside the selected brain regions, it is an exact match.
#
# .. warning::
# The service "web API of the Allen Brain Atlas for the human microarray expression"
# is not available at the moment, therefore siibra is not able to fetch
# gene expression features. This is a known issue which we are investigating:
# https://github.com/FZJ-INM1-BDA/siibra-python/issues/636.
#
features = siibra.features.get(v1, siibra.features.molecular.GeneExpressions, gene="TAC1")
print(features[0].last_match_description)
6 changes: 0 additions & 6 deletions examples/03_data_features/004_gene_expressions.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,12 +17,6 @@
Gene expressions
~~~~~~~~~~~~~~~~
.. warning::
The service "web API of the Allen Brain Atlas for the human microarray expression"
is not available at the moment, therefore siibra is not able to fetch
gene expression features. This is a known issue which we are investigating:
https://github.com/FZJ-INM1-BDA/siibra-python/issues/636.
``siibra`` can query gene expression data from the Allen brain atlas. The gene
expressions are linked to atlas regions by coordinates of their probes in MNI
space. When querying feature by a region, ``siibra`` automatically builds a
Expand Down

0 comments on commit 8d68cef

Please sign in to comment.