Merge pull request #488 from FZJ-INM1-BDA/add_DTI_voi #1960
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| name: '[test] unit test' | |
| on: [push] | |
| jobs: | |
| unit-tests: | |
| runs-on: ubuntu-latest | |
| env: | |
| # unit tests should not need tokens | |
| # KEYCLOAK_CLIENT_ID: ${{ secrets.KEYCLOAK_CLIENT_ID }} | |
| # KEYCLOAK_CLIENT_SECRET: ${{ secrets.KEYCLOAK_CLIENT_SECRET }} | |
| SIIBRA_LOG_LEVEL: DEBUG | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ '3.10', '3.9', '3.8', '3.7' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -U . | |
| pip install -r requirements-test.txt | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Install test dependencies | |
| run: pip install pytest pytest-cov coverage | |
| - name: Run test with pytest | |
| run: | | |
| echo "Using github.ref: $GITHUB_REF" | |
| if [[ "$GITHUB_REF" != "refs/heads/main" ]] | |
| then | |
| export FAST_RUN=1 | |
| fi | |
| pytest -rx | |
| e2e-tests: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| # KEYCLOAK_CLIENT_ID: ${{ secrets.KEYCLOAK_CLIENT_ID }} | |
| # KEYCLOAK_CLIENT_SECRET: ${{ secrets.KEYCLOAK_CLIENT_SECRET }} | |
| FOO: BAR | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ 'ubuntu-latest', 'windows-latest' ] | |
| python-version: [ '3.10', '3.9', '3.8', '3.7' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache SIIBRA_CACHEDIR | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ runner.temp }} | |
| key: ${{ runner.os }} | |
| restore-keys: | | |
| ${{ runner.os }} | |
| - name: Install dependencies | |
| shell: bash | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -U . | |
| pip install -r requirements-test.txt | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Install test dependencies | |
| run: pip install pytest pytest-cov coverage | |
| - name: Run test with pytest | |
| shell: bash | |
| run: | | |
| export SIIBRA_CACHEDIR=${{ runner.temp }} | |
| echo "Using github.ref: $GITHUB_REF" | |
| if [[ "$GITHUB_REF" != "refs/heads/main" ]] | |
| then | |
| export FAST_RUN=1 | |
| fi | |
| pytest -rx e2e | |
| check-importable: | |
| runs-on: ubuntu-latest | |
| env: | |
| KEYCLOAK_CLIENT_ID: ${{ secrets.KEYCLOAK_CLIENT_ID }} | |
| KEYCLOAK_CLIENT_SECRET: ${{ secrets.KEYCLOAK_CLIENT_SECRET }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ '3.10', '3.9', '3.8', '3.7' ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -U . | |
| - name: cd to / and try to import | |
| run: | | |
| cd / && python -c 'import siibra' |