Update maps and spaces to use updated volume schema utilizing mapping

FZJ-INM1-BDA · Jul 15, 2024 · 8eb8585 · 8eb8585
1 parent a366642
commit 8eb8585
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Showing 62 changed files with 172,697 additions and 305,939 deletions.
diff --git a/maps/bigbrain-cortical-labelled.json b/maps/bigbrain-cortical-labelled.json
diff --git a/maps/bigbrain-isocortex-labelled.json b/maps/bigbrain-isocortex-labelled.json
@@ -20,59 +20,33 @@
 			"@type": "siibra/attr/data/image/v0.1",
 			"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
 			"format": "neuroglancer/precomputed",
-			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif"
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+			"mapping": {
+				"Isocortex": {
+					"color": "#C8C8C8",
+					"label": 100
+				},
+				"Non-isocortical structures": {
+					"color": "#FFFFFF",
+					"label": 200
+				}
+			}
 		},
 		{
 			"@type": "siibra/attr/data/mesh/v0.1",
 			"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
 			"format": "neuroglancer/precompmesh",
-			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif"
-		}
-	],
-	"region_attributes": {
-		"Isocortex": [
-			{
-				"@type": "siibra/attr/data/image/v0.1",
-				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
-				"format": "neuroglancer/precomputed",
-				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
-				"volume_selection_options": {
-					"label": 100
-				},
-				"color": "#C8C8C8"
-			},
-			{
-				"@type": "siibra/attr/data/mesh/v0.1",
-				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
-				"format": "neuroglancer/precompmesh",
-				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
-				"volume_selection_options": {
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+			"mapping": {
+				"Isocortex": {
+					"color": "#C8C8C8",
 					"label": 100
 				},
-				"color": "#C8C8C8"
-			}
-		],
-		"Non-isocortical structures": [
-			{
-				"@type": "siibra/attr/data/image/v0.1",
-				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
-				"format": "neuroglancer/precomputed",
-				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
-				"volume_selection_options": {
-					"label": 200
-				},
-				"color": "#FFFFFF"
-			},
-			{
-				"@type": "siibra/attr/data/mesh/v0.1",
-				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
-				"format": "neuroglancer/precompmesh",
-				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
-				"volume_selection_options": {
+				"Non-isocortical structures": {
+					"color": "#FFFFFF",
 					"label": 200
-				},
-				"color": "#FFFFFF"
+				}
 			}
-		]
-	}
+		}
+	]
 }