Convert maps to attribute collection

FZJ-INM1-BDA · Jul 3, 2024 · 4d3f215 · 4d3f215
1 parent 690b438
commit 4d3f215
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Showing 60 changed files with 255,855 additions and 78,837 deletions.
diff --git a/maps/bigbrain-cortical-labelled.json b/maps/bigbrain-cortical-labelled.json
diff --git a/maps/bigbrain-isocortex-labelled.json b/maps/bigbrain-isocortex-labelled.json
@@ -1,31 +1,77 @@
 {
-	"space": {
-		"@id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588"
-	},
-	"parcellation": {
-		"@id": "juelich/iav/atlas/v1.0.0/4"
-	},
-	"volumes": [
+	"@type": "siibra/atlases/parcellation_map/v0.1",
+	"parcellation_id": "juelich/iav/atlas/v1.0.0/4",
+	"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+	"maptype": "labelled",
+	"attributes": [
 		{
-			"@type": "siibra/volume/v0.0.1",
-			"providers": {
-				"neuroglancer/precomputed": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
-				"neuroglancer/precompmesh": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif"
-			}
+			"@type": "siibra/attr/desc/id/v0.1",
+			"value": "fc4c5af9-f745-7936-5bd2-443f1ca32868"
+		},
+		{
+			"@type": "siibra/attr/desc/name/v0.1",
+			"value": "Isocortex Segmentation on BigBrain microscopic template (histology) - labelled - 1 regions"
+		},
+		{
+			"@type": "siibra/attr/desc/speciesspec/v0.1",
+			"value": "homo sapiens"
+		},
+		{
+			"@type": "siibra/attr/data/image/v0.1",
+			"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+			"format": "neuroglancer/precomputed",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif"
+		},
+		{
+			"@type": "siibra/attr/data/mesh/v0.1",
+			"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+			"format": "neuroglancer/precompmesh",
+			"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif"
 		}
 	],
-	"@type": "siibra/map/v0.0.1",
-	"indices": {
+	"region_attributes": {
 		"Isocortex": [
 			{
-				"volume": 0,
-				"label": 100
+				"@type": "siibra/attr/data/image/v0.1",
+				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+				"format": "neuroglancer/precomputed",
+				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+				"volume_selection_options": {
+					"label": 100
+				},
+				"color": "#C8C8C8"
+			},
+			{
+				"@type": "siibra/attr/data/mesh/v0.1",
+				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+				"format": "neuroglancer/precompmesh",
+				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+				"volume_selection_options": {
+					"label": 100
+				},
+				"color": "#C8C8C8"
 			}
 		],
 		"Non-isocortical structures": [
 			{
-				"volume": 0,
-				"label": 200
+				"@type": "siibra/attr/data/image/v0.1",
+				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+				"format": "neuroglancer/precomputed",
+				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+				"volume_selection_options": {
+					"label": 200
+				},
+				"color": "#FFFFFF"
+			},
+			{
+				"@type": "siibra/attr/data/mesh/v0.1",
+				"space_id": "minds/core/referencespace/v1.0.0/a1655b99-82f1-420f-a3c2-fe80fd4c8588",
+				"format": "neuroglancer/precompmesh",
+				"url": "https://neuroglancer.humanbrainproject.eu/precomputed/BigBrainRelease.2015/classif",
+				"volume_selection_options": {
+					"label": 200
+				},
+				"color": "#FFFFFF"
 			}
 		]
 	}