Manually correct julich brain <= v3.0.3 region tree issues based on 3.1

FZJ-INM1-BDA · Dec 12, 2024 · 3b348b2 · 3b348b2
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commit 3b348b2
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Showing 3 changed files with 79 additions and 220 deletions.
diff --git a/parcellations/julichbrain_v1_18.json b/parcellations/julichbrain_v1_18.json
@@ -22,7 +22,7 @@
 							"name": "basal forebrain",
 							"children": [
 								{
-									"name": "magnocellular group within septum",
+									"name": "magnocellular group",
 									"children": [
 										{
 											"name": "Ch 123 (Basal Forebrain)",
@@ -70,31 +70,6 @@
 											"rgb": "#74F30C"
 										}
 									]
-								},
-								{
-									"name": "magnocellular group within horizontal limb of diagnoal band",
-									"children": [
-										{
-											"name": "Ch 123 (Basal Forebrain)",
-											"children": [
-												{
-													"name": "Ch 123 (Basal Forebrain) - left hemisphere",
-													"rgb": "#7CE9A7",
-													"ebrains": {}
-												},
-												{
-													"name": "Ch 123 (Basal Forebrain) - right hemisphere",
-													"rgb": "#7CE9A7",
-													"ebrains": {}
-												}
-											],
-											"ebrains": {
-												"minds/core/parcellationregion/v1.0.0": "bb111a95-e04c-4987-8254-4af4ed8b0022",
-												"openminds/ParcellationEntity": "e6e94b7b-463c-487f-a801-723850c5997d"
-											},
-											"rgb": "#7CE9A7"
-										}
-									]
 								}
 							]
 						},
@@ -238,26 +213,6 @@
 												"openminds/ParcellationEntity": "2976e533-2d73-42a1-918b-bc4ae4f16243"
 											},
 											"rgb": "#5904BE"
-										},
-										{
-											"name": "CM (Amygdala)",
-											"children": [
-												{
-													"name": "CM (Amygdala) - left hemisphere",
-													"rgb": "#0978DC",
-													"ebrains": {}
-												},
-												{
-													"name": "CM (Amygdala) - right hemisphere",
-													"rgb": "#0978DC",
-													"ebrains": {}
-												}
-											],
-											"ebrains": {
-												"minds/core/parcellationregion/v1.0.0": "7aba8aef-6430-4fa7-ab54-8ecac558faed",
-												"openminds/ParcellationEntity": "2976e533-2d73-42a1-918b-bc4ae4f16243"
-											},
-											"rgb": "#0978DC"
 										}
 									]
 								}
@@ -2447,31 +2402,6 @@
 											"rgb": "#C8640A"
 										}
 									]
-								},
-								{
-									"name": "emboliform nucleus",
-									"children": [
-										{
-											"name": "Interposed Nucleus (Cerebellum)",
-											"children": [
-												{
-													"name": "Interposed Nucleus (Cerebellum) - left hemisphere",
-													"rgb": "#AA1D0A",
-													"ebrains": {}
-												},
-												{
-													"name": "Interposed Nucleus (Cerebellum) - right hemisphere",
-													"rgb": "#AA1D0A",
-													"ebrains": {}
-												}
-											],
-											"ebrains": {
-												"minds/core/parcellationregion/v1.0.0": "85e7bb13-4b73-4f6f-8222-3adb7b800788",
-												"openminds/ParcellationEntity": "d4d42283-a9e7-40b5-899d-3d2b220c01cf"
-											},
-											"rgb": "#AA1D0A"
-										}
-									]
 								}
 							]
 						}

diff --git a/parcellations/julichbrain_v2_9_0.json b/parcellations/julichbrain_v2_9_0.json
@@ -22,7 +22,7 @@
 							"name": "basal forebrain",
 							"children": [
 								{
-									"name": "magnocellular group within septum",
+									"name": "magnocellular group",
 									"children": [
 										{
 											"name": "Ch 123 (Basal Forebrain)",
@@ -76,34 +76,6 @@
 											}
 										}
 									]
-								},
-								{
-									"name": "magnocellular group within horizontal limb of diagnoal band",
-									"children": [
-										{
-											"name": "Ch 123 (Basal Forebrain)",
-											"children": [
-												{
-													"name": "Ch 123 (Basal Forebrain) - left hemisphere",
-													"ebrains": {
-														"minds/core/parcellationregion/v1.0.0": "bb111a95-e04c-4987-8254-4af4ed8b0022"
-													},
-													"rgb": "#9FE770"
-												},
-												{
-													"name": "Ch 123 (Basal Forebrain) - right hemisphere",
-													"ebrains": {
-														"minds/core/parcellationregion/v1.0.0": "bb111a95-e04c-4987-8254-4af4ed8b0022"
-													},
-													"rgb": "#9FE770"
-												}
-											],
-											"rgb": "#9FE770",
-											"ebrains": {
-												"openminds/ParcellationEntity": "e6e94b7b-463c-487f-a801-723850c5997d"
-											}
-										}
-									]
 								}
 							]
 						},
@@ -3747,34 +3719,6 @@
 											}
 										}
 									]
-								},
-								{
-									"name": "emboliform nucleus",
-									"children": [
-										{
-											"name": "Interposed Nucleus (Cerebellum)",
-											"children": [
-												{
-													"name": "Interposed Nucleus (Cerebellum) - left hemisphere",
-													"ebrains": {
-														"minds/core/parcellationregion/v1.0.0": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
-													},
-													"rgb": "#59C943"
-												},
-												{
-													"name": "Interposed Nucleus (Cerebellum) - right hemisphere",
-													"ebrains": {
-														"minds/core/parcellationregion/v1.0.0": "85e7bb13-4b73-4f6f-8222-3adb7b800788"
-													},
-													"rgb": "#59C943"
-												}
-											],
-											"rgb": "#59C943",
-											"ebrains": {
-												"openminds/ParcellationEntity": "d4d42283-a9e7-40b5-899d-3d2b220c01cf"
-											}
-										}
-									]
 								}
 							]
 						}