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feat: fix parcellation -> parcellationscheme
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@xgui3783
xgui3783 committed Aug 15, 2024
1 parent 0b3a3f7 commit 16d729a
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Showing 32 changed files with 30 additions and 135 deletions.
5 changes: 1 addition & 4 deletions .github/workflows/check-maps-precompmesh.yml
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name: '[test] check maps precompmesh'

on:
push:
paths:
- 'maps/**.json'
on: [push]

jobs:
check_maps_precompmesh:
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2 changes: 1 addition & 1 deletion .github/workflows/check-schema.yml
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Expand Up @@ -22,7 +22,7 @@ jobs:
ref: 'main'

- name: move siibra-python one up from workspace
run: mv siibra-python-${{ github.run_id }}-${{ github.run_number }} ../siibra-schema
run: mv siibra-schema-${{ github.run_id }}-${{ github.run_number }} ../siibra-schema

- name: Install requirements
run: pip install -r ../siibra-schema/requirements.txt
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15 changes: 0 additions & 15 deletions .github/workflows/test-configuration.yml
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Expand Up @@ -47,21 +47,6 @@ jobs:
- name: Region attribute compliance
run: python _ci/region_attr_compliance.py

check_map_volume_idx:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.10
uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Install requirements
run: |
pip install -U pip
pip install -r _ci/requirements.txt
- name: Verify map volume indices
run: python _ci/verify_volume_idx.py

check_maps:
runs-on: ubuntu-latest
steps:
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87 changes: 0 additions & 87 deletions _ci/verify_volume_idx.py
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This file was deleted.

2 changes: 1 addition & 1 deletion parcellations/bundles_long.json → parcellationschemes/bundles_long.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/bundles_short.json → parcellationschemes/bundles_short.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/cortical_layers.json → parcellationschemes/cortical_layers.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/difumo1024.json → parcellationschemes/difumo1024.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/difumo128.json → parcellationschemes/difumo128.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/difumo256.json → parcellationschemes/difumo256.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/difumo512.json → parcellationschemes/difumo512.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/difumo64.json → parcellationschemes/difumo64.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/dk.json → parcellationschemes/dk.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion ...ns/harvard-oxford-cortl-maxprob-thr0.json → ...es/harvard-oxford-cortl-maxprob-thr0.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion ...s/harvard-oxford-cortl-maxprob-thr25.json → ...s/harvard-oxford-cortl-maxprob-thr25.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/isocortex.json → parcellationschemes/isocortex.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/julichbrain_v1_18.json → parcellationschemes/julichbrain_v1_18.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/julichbrain_v2_9_0.json → parcellationschemes/julichbrain_v2_9_0.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/julichbrain_v3_0_3.json → parcellationschemes/julichbrain_v3_0_3.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/julichbrain_v3_1.json → parcellationschemes/julichbrain_v3_1.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/marsatlas.json → parcellationschemes/marsatlas.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/mebrains_parcellation.json → ...llationschemes/mebrains_parcellation.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/mouse_allenccfv3_2015.json → ...llationschemes/mouse_allenccfv3_2015.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/mouse_allenccfv3_2017.json → ...llationschemes/mouse_allenccfv3_2017.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/rat_waxholmv1_01.json → parcellationschemes/rat_waxholmv1_01.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/rat_waxholmv2.json → parcellationschemes/rat_waxholmv2.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/rat_waxholmv3.json → parcellationschemes/rat_waxholmv3.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/rat_waxholmv4.json → parcellationschemes/rat_waxholmv4.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion ...lations/superficial-white-bundle-hcp.json → ...schemes/superficial-white-bundle-hcp.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/vep.json → parcellationschemes/vep.json
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@@ -1,5 +1,5 @@
{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/visfAtlas.json → parcellationschemes/visfAtlas.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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2 changes: 1 addition & 1 deletion parcellations/vonEconomoKoskinas.json → parcellationschemes/vonEconomoKoskinas.json
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{
"@type": "siibra/atlases/parcellation/v0.1",
"@type": "siibra/atlases/parcellationscheme/v0.1",
"attributes": [
{
"@type": "siibra/attr/desc/id/v0.1",
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