[cron] update KG proxy #37
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| name: '[cron] update KG proxy' | |
| on: | |
| schedule: | |
| - cron: '5 4 * * 0' # every Sunday at 4am | |
| env: | |
| EBRAINS_CCFLOW_CLIENT_ID: ${{ secrets.EBRAINS_OIDC_SIIBRA_CI_CLIENT_ID }} | |
| EBRAINS_CCFLOW_CLIENT_SECRET: ${{ secrets.EBRAINS_OIDC_SIIBRA_CI_CLIENT_SECRET }} | |
| jobs: | |
| update: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - artefacts-dir: "ebrainsquery/v3/AtlasAnnotation" | |
| query-id: "66c69c41-ad91-4915-ac23-897fd0c60211" | |
| - artefacts-dir: "ebrainsquery/v3/ParcellationEntity" | |
| query-id: "d236e213-c048-4331-bfd9-b45c60bc3d03" | |
| - artefacts-dir: "ebrainsquery/v3/ParcellationEntityVersion" | |
| query-id: "5e80bb84-68cf-4425-859b-5306f6838693" | |
| - artefacts-dir: "ebrainsquery/v3/CustomAnatomicalEntity" | |
| query-id: "d7cdc1d6-0aa5-498a-94ff-0291b95db13d" | |
| - artefacts-dir: "ebrainsquery/v3/Dataset" | |
| query-id: "fe925a3a-bfcd-43a9-8eab-f8d4589cedea" | |
| - artefacts-dir: "ebrainsquery/v3/DatasetVersion" | |
| query-id: "64ad0cd6-fbd6-47d3-b247-099e9ce8f313" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: 'Install dependencies' | |
| run: | | |
| pip install ebrains-drive | |
| pip install git+https://github.com/xgui3783/ebrains-iam-util.git | |
| - name: 'Fetch and Sync to KG proxy' | |
| run: | | |
| export EBRAINS_QUERY_ID=${{ matrix.query-id }} | |
| export EBRAINS_ARTEFACTS_DIR=${{ matrix.artefacts-dir }} | |
| export EBRAINS_CCFLOW_CLIENT_ID=${{ env.EBRAINS_CCFLOW_CLIENT_ID }} | |
| export EBRAINS_CCFLOW_CLIENT_SECRET=${{ env.EBRAINS_CCFLOW_CLIENT_SECRET }} | |
| python _ci/cron_sync_kg_proxy.py | |
| latest-siibra-release: | |
| runs-on: ubuntu-latest | |
| env: | |
| GH_TOKEN: ${{ github.token }} | |
| outputs: | |
| LATEST_TAG: ${{ steps.get-latest-tag.outputs.LATEST_TAG }} | |
| steps: | |
| - id: get-latest-tag | |
| run: | | |
| LATEST_TAG=$(gh release -R fzj-inm1-bda/siibra-python ls --jq '.[0].tagName' --json 'tagName') | |
| echo LATEST_TAG=$LATEST_TAG | |
| echo "LATEST_TAG=$LATEST_TAG" >> $GITHUB_OUTPUT | |
| check-region-e2e: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - update | |
| - latest-siibra-release | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: 'fzj-inm1-bda/siibra-python' | |
| ref: ${{ needs.latest-siibra-release.outputs.LATEST_TAG }} | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - run: pip install -U pip && pip install -e . && pip install pytest | |
| - run: pytest e2e/core/test_region.py | |