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fix: siibra version & fix regional map #148

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merged 1 commit into from
Jan 23, 2024
Merged

fix: siibra version & fix regional map #148

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2 changes: 1 addition & 1 deletion api/common/data_handlers/compounds/download.py
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Original file line number Diff line number Diff line change
Expand Up @@ -128,7 +128,7 @@ def write_desc(filename, obj, **kwargs):
space: _space.Space = siibra.spaces[space_id]
region = siibra.get_region(parcellation_id, region_id)
region_filename = f"{region.key}.nii.gz"
regional_map = region.fetch_regional_map(space, siibra.MapType.STATISTICAL)
regional_map = region.get_regional_map(space, siibra.MapType.STATISTICAL).fetch()
zipfile.writestr(region_filename, gzip.compress(regional_map.to_bytes()))
write_desc(f'{region_filename}.info.md', region)
except Exception as e:
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2 changes: 1 addition & 1 deletion api/common/data_handlers/volumes/parcellationmap.py
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Expand Up @@ -147,7 +147,7 @@ def get_parcellation_labelled_map(parcellation_id: str, space_id: str, region_id
volume_data = None
if region_id is not None:
region = siibra.get_region(parcellation_id, region_id)
volume_data = region.fetch_regional_map(space_id, siibra.MapType.LABELLED)
volume_data = region.get_regional_map(space_id, siibra.MapType.LABELLED).fetch()
else:
labelled_map = siibra.get_map(parcellation_id, space_id, siibra.MapType.LABELLED)
assert labelled_map is not None, f"{error_text} returns None"
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2 changes: 1 addition & 1 deletion requirements/siibra.txt
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Original file line number Diff line number Diff line change
@@ -1,3 +1,3 @@
# siibra==1.0a4
git+https://github.com/FZJ-INM1-BDA/siibra-python.git@5789433407a70f921b7e03055533f043750c08c9
git+https://github.com/FZJ-INM1-BDA/siibra-python.git@d5fa00f
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