tmp: cache ebrainsdataset

api/serialization/features/_basetypes/volume_of_interest.py

@@ -9,7 +9,7 @@
 
 # serializing voi is... somewhat complicated, so doing it manually
 @serialize(Image, pass_super_model=False)
-def voi_to_model(feat: Image, **kwargs) -> SiibraVoiModel:
+def voi_to_model(feat: Image, detail=False, **kwargs) -> SiibraVoiModel:
     """Serialize siibra Image instance
     
     Serializing Image instance turns out to be rather complex, so doing it manually.
@@ -19,13 +19,13 @@ def voi_to_model(feat: Image, **kwargs) -> SiibraVoiModel:
     
     Returns:
         SiibraVoiModel"""
-    feature_super_model = instance_to_model(feat, use_class=Feature)
-    volume_super_model = instance_to_model(feat, use_class=Volume)
+    feature_super_model = instance_to_model(feat, detail=detail, use_class=Feature)
+    volume_super_model = instance_to_model(feat, detail=detail, use_class=Volume)
 
     feature_dict = feature_super_model.dict()
     feature_dict.pop("@type", None)
     return SiibraVoiModel(
         **feature_dict,
         volume=volume_super_model,
-        boundingbox=instance_to_model(feat.get_boundingbox()),
+        boundingbox=instance_to_model(feat.get_boundingbox(clip=False)),
     )

api/serialization/util/__init__.py

@@ -57,12 +57,12 @@ def instance_to_model(instance: Any, * , use_class: Type=None, skip_classes: Lis
             return None
         return instance
     if isinstance(instance, (list, tuple)):
-        return [instance_to_model(item) for item in instance]
+        return [instance_to_model(item, **kwargs) for item in instance]
     if isinstance(instance, dict):
         if not all([isinstance(key, str) for key in instance]):
             raise NonStrKeyException(f"Attempting to serialize dict with non str keys! {instance}")
         return {
-            key: instance_to_model(value)
+            key: instance_to_model(value, **kwargs)
             for key, value in instance.items()
         }
     for Cls in instance.__class__.__mro__:

requirements/siibra.txt

@@ -1,2 +1,3 @@
-siibra==1.0a5
+# siibra==1.0a5
+git+https://github.com/FZJ-INM1-BDA/siibra-python.git@50f038f
 plotly