fix: remap volume provider #414
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| name: '[cd]docker images' | |
| on: | |
| push: | |
| branches: | |
| - master | |
| release: | |
| types: | |
| - published | |
| env: | |
| OKD_PROJECT: siibra-api | |
| OKD_PROD_ENDPOINT: https://okd.hbp.eu:443 | |
| OKD_DEV_ENDPOINT: https://okd-dev.hbp.eu:443 | |
| OKD_PROD_SECRET: ${{ secrets.OKD_PROD_SECRET }} | |
| OKD_DEV_SECRET: ${{ secrets.OKD_DEV_SECRET }} | |
| DOCKER_REGISTRY: 'docker-registry.ebrains.eu/siibra/' | |
| DOCKER_IMG: 'siibra-api' | |
| jobs: | |
| build-docker-img: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| flavor: ['server', 'worker', 'all'] | |
| include: | |
| - flavor: 'all' | |
| dockerfile: 'Dockerfile' | |
| tag_suffix: '' | |
| - flavor: 'worker' | |
| dockerfile: 'worker.dockerfile' | |
| tag_suffix: '-worker' | |
| - flavor: 'server' | |
| dockerfile: 'server.dockerfile' | |
| tag_suffix: '-server' | |
| steps: | |
| - name: "Sanity check github.ref" | |
| run: echo GITHUB_REF - $GITHUB_REF - github.ref - ${{ github.ref }} | |
| - uses: actions/checkout@v4 | |
| - name: "Build docker image" | |
| run: | | |
| GIT_HASH=$(git rev-parse --short HEAD) | |
| cached_image=${{ env.DOCKER_REGISTRY }}${{ env.DOCKER_IMG }}:latest${{ matrix.tag_suffix }} | |
| echo "Pulling $cached_image to populate cached layers." | |
| docker pull $cached_image | |
| docker build --build-arg GIT_HASH=$GIT_HASH -t siibra-api-tmp-img -f ${{ matrix.dockerfile }} . | |
| - name: "Tag and Push (latest || rc)" | |
| if: ${{ (github.event_name == 'push') || contains(github.ref, 'rc') }} | |
| run: | | |
| if [[ "$GITHUB_REF" = *"rc"* ]] | |
| then | |
| TAG_BASE=rc | |
| else | |
| TAG_BASE=latest | |
| fi | |
| NEW_TAG=${{ env.DOCKER_REGISTRY }}${{ env.DOCKER_IMG }}:${TAG_BASE}${{ matrix.tag_suffix }} | |
| docker tag siibra-api-tmp-img ${NEW_TAG} | |
| echo "Login to docker registry" | |
| docker login \ | |
| -u '${{ secrets.EBRAINS_DOCKER_REG_USER }}' \ | |
| -p '${{ secrets.EBRAINS_DOCKER_REG_TOKEN }}' \ | |
| docker-registry.ebrains.eu | |
| docker push $NEW_TAG | |
| - name: "Tag and Push (release)" | |
| if : ${{ (github.event_name == 'release') && !contains(github.ref, 'rc') }} | |
| run: | | |
| echo "Login to docker registry" | |
| docker login \ | |
| -u '${{ secrets.EBRAINS_DOCKER_REG_USER }}' \ | |
| -p '${{ secrets.EBRAINS_DOCKER_REG_TOKEN }}' \ | |
| docker-registry.ebrains.eu | |
| VERSION=$(cat api/VERSION) | |
| while [[ "$VERSION" == *"."* ]] | |
| do | |
| if [[ "$BREAK" == "0" ]] | |
| then | |
| echo "Fuse broke!" | |
| exit 1 | |
| fi | |
| VERSIONED_DOCKERTAG=${{ env.DOCKER_REGISTRY }}${{ env.DOCKER_IMG }}:${VERSION}${{ matrix.tag_suffix }} | |
| echo "tagging and pushing $VERSIONED_DOCKERTAG" | |
| docker tag siibra-api-tmp-img $VERSIONED_DOCKERTAG | |
| docker push $VERSIONED_DOCKERTAG | |
| echo "Push successful... Incrementing version & break" | |
| VERSION=$(echo $VERSION | sed -e 's/\.\w*$//g') | |
| BREAK=$(( "$BREAK" - 1 )) | |
| done | |
| echo "Done" | |
| setup-envvar: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| queues: ${{ steps.set-env-var.outputs.queues }} | |
| version: ${{ steps.set-env-var.outputs.version }} | |
| needs: build-docker-img | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: 'Setting env var' | |
| id: set-env-var | |
| run: | | |
| queues=$(python -c 'import api.siibra_api_config as cfg; print(" ".join([f"{q!r}" for q in cfg.queues]))') >> "$GITHUB_OUTPUT" | |
| version=$(python -c 'import api.siibra_api_config as cfg; print(cfg.__version__)') >> "$GITHUB_OUTPUT" | |
| if [[ -z "$version" ]] | |
| then | |
| echo "Version population failed: $version" | |
| exit 1 | |
| fi | |
| if [[ -z "$queues" ]] | |
| then | |
| echo "Queues population failed: $queues" | |
| exit 1 | |
| fi | |
| echo queues=$queues >> $GITHUB_OUTPUT | |
| echo version=$version >> $GITHUB_OUTPUT | |
| deploy-latest-on-okd: | |
| needs: setup-envvar | |
| if: ${{ github.event_name == 'push' }} | |
| uses: ./.github/workflows/deploy-on-okd.yml | |
| with: | |
| okd_endpoint: https://okd-dev.hbp.eu:443 | |
| flavor: latest | |
| queues: ${{ needs.setup-envvar.outputs.queues }} | |
| version: ${{ needs.setup-envvar.outputs.version }} | |
| workerimage: docker-registry.ebrains.eu/siibra/siibra-api:latest-worker | |
| secrets: | |
| okd_token: ${{ secrets.OKD_DEV_SECRET }} | |
| deploy-rc-on-okd: | |
| needs: setup-envvar | |
| if: ${{ github.event_name == 'release' && contains(github.ref, 'rc') }} | |
| uses: ./.github/workflows/deploy-on-okd.yml | |
| with: | |
| okd_endpoint: https://okd.hbp.eu:443 | |
| flavor: rc | |
| queues: ${{ needs.setup-envvar.outputs.queues }} | |
| version: ${{ needs.setup-envvar.outputs.version }} | |
| workerimage: docker-registry.ebrains.eu/siibra/siibra-api:rc-worker | |
| secrets: | |
| okd_token: ${{ secrets.OKD_PROD_SECRET }} | |
| deploy-rc-on-data-validation: | |
| needs: | |
| - build-docker-img | |
| if: ${{ github.event_name == 'push' }} | |
| runs-on: siibra-data-validation | |
| steps: | |
| - run: | | |
| /bin/bash -c "cd /softwares/software && ./restart.sh" | |
| deploy-prod-on-okd: | |
| needs: setup-envvar | |
| if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| deploy-site: ['jsc', 'cscs'] | |
| include: | |
| - deploy-site: 'jsc' | |
| okd-endpoint: https://okd.jsc.hbp.eu:443 | |
| - deploy-site: 'cscs' | |
| okd-endpoint: https://okd.hbp.eu:443 | |
| uses: ./.github/workflows/deploy-on-okd.yml | |
| with: | |
| okd_endpoint: ${{ matrix.okd-endpoint }} | |
| flavor: stable | |
| queues: ${{ needs.setup-envvar.outputs.queues }} | |
| version: ${{ needs.setup-envvar.outputs.version }} | |
| workerimage: docker-registry.ebrains.eu/siibra/siibra-api:0.3-worker | |
| secrets: | |
| okd_token: ${{ matrix.deploy-site == 'jsc' && secrets.OKD_JSC_SECRET || secrets.OKD_PROD_SECRET }} | |
| # rc | |
| warmup-rc-at-helm: | |
| needs: setup-envvar | |
| if: ${{ github.event_name == 'release' && contains(github.ref, 'rc') }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/workflows/composite-set-k8s-cred | |
| with: | |
| secrets: ${{ secrets.KUBECONFIG }} | |
| - timeout-minutes: 15 # should not take more than 15 minutes to warmup cache | |
| run: | | |
| # Delete pod at the beginning of the workflow | |
| # This is so that logs can be inspected | |
| kubectl delete pod/warmup-pod || echo "Pod pod/warmup-pod not found." | |
| # TODO Flaky | |
| # see .helm/siibra-api/templates/_helpers.tpl how siibra-api.cache-dir is defined | |
| WARM_CACHE_YML=$(SIIBRA_CACHEDIR=/siibra-api-volume/${{ needs.setup-envvar.outputs.version }}-rc/ envsubst < .helm/adhoc/warm-cache.yaml) | |
| echo -e "WARM_CACHE_YML: \n$WARM_CACHE_YML" | |
| echo "$WARM_CACHE_YML" | kubectl apply -f - | |
| while true | |
| do | |
| sleep 10 | |
| POD_PHASE=$(kubectl get pod warmup-pod -o json | jq -r '.status.phase') | |
| echo Possible phases: Pending, Running, Succeeded, Failed, Unknown | |
| echo Found phase: $POD_PHASE | |
| if [[ "$POD_PHASE" == "Failed" ]] || [[ "$POD_PHASE" == "Unknown" ]] | |
| then | |
| exit 1 | |
| fi | |
| if [[ "$POD_PHASE" == "Succeeded" ]] | |
| then | |
| exit 0 | |
| fi | |
| done | |
| clear-rc-redis-cache: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 1 # should not take more than 1 minute to clear the cache | |
| needs: | |
| - warmup-rc-at-helm | |
| - setup-envvar | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/workflows/composite-set-k8s-cred | |
| with: | |
| secrets: ${{ secrets.KUBECONFIG }} | |
| - run: | | |
| REDIS_POD=$(kubectl get pod -l app=cache-redis | grep Running | awk '{print $1}') | |
| echo kubectl exec $REDIS_POD -- /bin/ash -c "redis-cli redis-cli --scan --pattern '*\[${{ needs.setup-envvar.outputs.version }}\]*' | while IFS= read -r line; do redis-cli del "$line"; done" | |
| kubectl exec $REDIS_POD -- /bin/ash -c "redis-cli redis-cli --scan --pattern '*\[${{ needs.setup-envvar.outputs.version }}\]*' | while IFS= read -r line; do redis-cli del "$line"; done" | |
| deploy-rc-via-helm: | |
| needs: warmup-rc-at-helm | |
| if: ${{ github.event_name == 'release' && contains(github.ref, 'rc') }} | |
| uses: ./.github/workflows/deploy-helm.yml | |
| with: | |
| DEPLOYMENT_NAME: rc | |
| secrets: | |
| KUBECONFIG: ${{ secrets.KUBECONFIG }} | |
| # prod | |
| copy-by-helm: | |
| needs: setup-envvar | |
| if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 # should not take more than 15 minutes to copy cache | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: ./.github/workflows/composite-set-k8s-cred | |
| with: | |
| secrets: ${{ secrets.KUBECONFIG }} | |
| - name: 'set FROM_DIR TO_DIR' | |
| run: | | |
| VERSION=${{ needs.setup-envvar.outputs.version }} | |
| # TODO use label exclusively in the future | |
| POD=$(kubectl get pod -l role=server | grep rc-siibra-api | awk '{print $1}') | |
| echo POD: $POD | |
| cache_str=$(kubectl exec $POD env | grep SIIBRA_CACHEDIR) | |
| FROM_DIR=${cache_str//SIIBRA_CACHEDIR=/} | |
| TO_DIR=${FROM_DIR//-rc/} | |
| POD_NAME=copy-cache | |
| echo FROM_DIR: $FROM_DIR, TO_DIR: $TO_DIR, POD_NAME: $POD_NAME | |
| echo "FROM_DIR=$FROM_DIR" >> $GITHUB_ENV | |
| echo "TO_DIR=$TO_DIR" >> $GITHUB_ENV | |
| echo "POD_NAME=$POD_NAME" >> $GITHUB_ENV | |
| - name: 'start container' | |
| run: | | |
| # delete pod before workflow, so that logs can be inspected | |
| kubectl delete pod/$POD_NAME || echo "Pod pod/$POD_NAME not found." | |
| FROM_DIR=$FROM_DIR TO_DIR=$TO_DIR envsubst < .helm/adhoc/copy-cache.yaml | kubectl apply -f - | |
| - name: 'Ensure copy completes' | |
| run: | | |
| while true | |
| do | |
| sleep 10 | |
| POD_PHASE=$(kubectl get pod $POD_NAME -o json | jq -r '.status.phase') | |
| echo Possible phases: Pending, Running, Succeeded, Failed, Unknown | |
| echo Found phase: $POD_PHASE | |
| if [[ "$POD_PHASE" == "Failed" ]] || [[ "$POD_PHASE" == "Unknown" ]] | |
| then | |
| exit 1 | |
| fi | |
| if [[ "$POD_PHASE" == "Succeeded" ]] | |
| then | |
| exit 0 | |
| fi | |
| done | |
| deploy-prod-via-helm: | |
| needs: copy-by-helm | |
| if: ${{ github.event_name == 'release' && !contains(github.ref, 'rc') }} | |
| uses: ./.github/workflows/deploy-helm.yml | |
| with: | |
| DEPLOYMENT_NAME: prod | |
| secrets: | |
| KUBECONFIG: ${{ secrets.KUBECONFIG }} |