Releases: EUCANCan/oncoliner
v1.1.1
v1.1.0
v1.1.0 (2024-07-17)
Feature
- feat: Add BED masks (
367ea87
)
Fix
-
fix(UI): Remove reference to old H_score (
970e567
) -
fix(PipelineDesigner): Fix max-recommentions arg type (
0883a91
) -
fix: Fix assessment typo (
38bf0dc
) -
fix: Rename PHS and remove actionable genes (
02e101b
)
Performance
- perf(Improvement): Optimize multi-core analysis (
0aa662b
)
v1.0.0
v1.0.0 (2023-12-04)
Breaking
- fix: Fix Dockerfile
BREAKING CHANGE: Dummy to trigger 1.0.0 (de5cfc0
)
Feature
-
feat(UI): Prettify tables (
b009917
) -
feat(UI): Prettify variant callers names (
aeb8cf8
) -
feat(UI): Add harmonization text and style (
c67d1c7
) -
feat(UI): Add style and text for improvement tab (
738b3f7
) -
feat(UI): Add default column ordering (
6f792fc
) -
feat: Add fixed row with the baseline (
3907eab
) -
feat: Add variant callers combinations (
4fbc459
) -
feat(Harmonization): Add heterogeneity scores (
91c2907
) -
feat: Add VCF intersect and union tools (
d4b9686
) -
feat(UI): Add text to improvement and harmonization (
6dd652d
) -
feat: Add actionable genes (
d87bcfe
) -
feat: Add prunning to harmonization (
d34155b
) -
feat: Add PipelineDesigner prunning (
e7224d4
) -
feat: Add improvement pruning (
3611188
) -
feat: Rework pipeline designer to work with configuration files (
1b871fd
) -
feat: Rework harmonizator (
b36e0f9
) -
feat: Add variant types parameter for filtering (
5e6ff2f
)
Fix
-
fix(UI): Fix harmonization display (
6501a55
) -
fix(UI): Selection in dropdown accordion now displays its hierarchy (#3)
Co-authored-by: Henri de Soyres <[email protected]> (23cea50
)
-
fix(UI): Add clarifications for improvement and harmonization (
59ab36c
) -
fix(UI): Fix loading screen not appearing (
4c88a3a
) -
fix(UI): Remove callers folders parameter (
b628991
) -
fix(UI): Hide callers in collapsable for improvement (
efd2e8b
) -
fix: Remove variant callers combinations from repo (
3489187
) -
fix(Assesment): Remove genes from stdout output (
f9ea399
) -
fix(UI): Remove lateral panels in improvement and harmonization (#2)
-
removed left panel for improvement and harmonization views, changed into tab and new component: dropdown tree
-
replaced variant type and size dropdown menu from list to accordion tree
Co-authored-by: Henri de Soyres <[email protected]> (a2bc9f9
)
-
fix(UI): Improve FP visibility in assesment (
9b5c62b
) -
fix(Harmonizator): Fix misordering of pipelines recomendations (
2ae66ab
) -
fix(UI): Remove genes from output tables (
53bd5b5
) -
fix: Fix gene aggregation (
a7dc290
) -
fix: Fix gene annotation I/O (
e31f9e1
) -
fix: Fix missing "samples" subfolder in improvement (
8d3c2a5
) -
fix: Fix missing baseline output in improvement (
b5b7e64
) -
fix: Remove pandas deprecation warning (
dbec680
) -
fix: Remove extra prints (
52939bf
) -
fix: Fix VCFs with mixed chr and non-chr contigs (
3d4371f
) -
fix: Improve input ingestion (
5eef8bc
)
Performance
-
perf(UI): Use default OS fonts (
f7e0851
) -
perf(UI): Improve performance when generating report (
d0e0228
) -
perf: Improve VCF intersection performance (
3af5c5d
)
Unknown
- deps(UI): Change HTML minify library (
8c67f1a
)
v0.2.0
v0.2.0 (2023-12-04)
Feature
-
feat(UI): Prettify tables (
b009917
) -
feat(UI): Prettify variant callers names (
aeb8cf8
) -
feat(UI): Add harmonization text and style (
c67d1c7
) -
feat(UI): Add style and text for improvement tab (
738b3f7
) -
feat(UI): Add default column ordering (
6f792fc
) -
feat: Add fixed row with the baseline (
3907eab
) -
feat: Add variant callers combinations (
4fbc459
) -
feat(Harmonization): Add heterogeneity scores (
91c2907
) -
feat: Add VCF intersect and union tools (
d4b9686
) -
feat(UI): Add text to improvement and harmonization (
6dd652d
) -
feat: Add actionable genes (
d87bcfe
) -
feat: Add prunning to harmonization (
d34155b
) -
feat: Add PipelineDesigner prunning (
e7224d4
) -
feat: Add improvement pruning (
3611188
) -
feat: Rework pipeline designer to work with configuration files (
1b871fd
) -
feat: Rework harmonizator (
b36e0f9
) -
feat: Add variant types parameter for filtering (
5e6ff2f
)
Fix
-
fix(UI): Fix harmonization display (
6501a55
) -
fix(UI): Selection in dropdown accordion now displays its hierarchy (#3)
Co-authored-by: Henri de Soyres <[email protected]> (23cea50
)
-
fix(UI): Add clarifications for improvement and harmonization (
59ab36c
) -
fix(UI): Fix loading screen not appearing (
4c88a3a
) -
fix(UI): Remove callers folders parameter (
b628991
) -
fix(UI): Hide callers in collapsable for improvement (
efd2e8b
) -
fix: Remove variant callers combinations from repo (
3489187
) -
fix(Assesment): Remove genes from stdout output (
f9ea399
) -
fix(UI): Remove lateral panels in improvement and harmonization (#2)
-
removed left panel for improvement and harmonization views, changed into tab and new component: dropdown tree
-
replaced variant type and size dropdown menu from list to accordion tree
Co-authored-by: Henri de Soyres <[email protected]> (a2bc9f9
)
-
fix(UI): Improve FP visibility in assesment (
9b5c62b
) -
fix(Harmonizator): Fix misordering of pipelines recomendations (
2ae66ab
) -
fix(UI): Remove genes from output tables (
53bd5b5
) -
fix: Fix gene aggregation (
a7dc290
) -
fix: Fix gene annotation I/O (
e31f9e1
) -
fix: Fix missing "samples" subfolder in improvement (
8d3c2a5
) -
fix: Fix missing baseline output in improvement (
b5b7e64
) -
fix: Remove pandas deprecation warning (
dbec680
) -
fix: Remove extra prints (
52939bf
) -
fix: Fix VCFs with mixed chr and non-chr contigs (
3d4371f
) -
fix: Improve input ingestion (
5eef8bc
)
Performance
-
perf(UI): Use default OS fonts (
f7e0851
) -
perf(UI): Improve performance when generating report (
d0e0228
) -
perf: Improve VCF intersection performance (
3af5c5d
)
Unknown
- deps(UI): Change HTML minify library (
8c67f1a
)
v0.1.0
v0.1.0 (2023-10-17)
Feature
-
feat(PipelineDesigner): Check for combination improvement (
03152ae
) -
feat: Include UI module (
1df8532
) -
feat: Add example to improvement module (
6d024f1
) -
feat: Add public data example (
40cb24d
) -
feat: Complete pipeline designer (
775caaa
) -
feat: Add pipeline designer tool (
d17058d
) -
feat: Add Dockerfile and singularity.def (
4f6d8c6
) -
feat: Add improvement and harmonization (
26c2418
) -
feat: Include assesment module (
08090f2
) -
feat: Add harmonization and UI (
7b7623a
) -
feat: Integrate with evaluation module (
4876ebb
)
Fix
-
fix: Add vcf_ops command tools (
99972af
) -
fix: Update Docker and Singularity recipies (
59deac9
) -
fix(UI): Change minification packages (
683e3fa
) -
fix(UI): Add missing columns (
a3731df
) -
fix(UI): Remove empty warnings (
6ea051d
) -
fix: Change to window_radius in harmonization (
45e28fb
) -
fix: Fix container files (
20f8497
) -
fix: Remove deprecated .warn (
07742e4
) -
fix: Change to warning if pipeline folder has more samples than config (
567d042
)