{2023.06} don't filter Lua dependency (and reinstall `gnuplot/5.4.2-GCCcore-11.2.0`) #380

boegel · 2023-11-09T14:52:01Z

Follow-up to #370 in which Lua was removed from filter-deps for AOFlagger in eessi-2023.06-eb-4.8.2-2022a.yml.

If the Lua 5.1 from the compat layer is providing to be problematic for some software, we should let EasyBuild provide a compatible Lua as dependency instead. This won't interfere with Lmod, which is hardwired to use the Lua it was installed with.

This will require a re-install of gnuplot, which was installed in pilot.eessi-hpc.org on top of the Lua provided by the 2023.06 compat layer.

eessi-bot · 2023-11-09T14:52:04Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software

…r removing Lua from filtered dependencies in EasyBuild configuration

bedroge · 2023-11-18T09:31:37Z

I've removed gnuplot from all 2023.06 subdirectories (there was just a single version of it):

$ sudo cvmfs_server diff --worktree pilot.eessi-hpc.org | grep "software/gnuplot$"
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/generic/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_n1/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/generic/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen3/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen2/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/skylake_avx512/software/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/haswell/software/gnuplot

$ sudo cvmfs_server diff --worktree pilot.eessi-hpc.org | grep "modules/all/gnuplot$"
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/generic/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_n1/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/generic/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen3/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen2/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/haswell/modules/all/gnuplot

$ sudo cvmfs_server diff --worktree pilot.eessi-hpc.org | grep "modules/vis/gnuplot$"
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/generic/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_n1/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/aarch64/neoverse_v1/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/generic/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen3/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/amd/zen2/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/skylake_avx512/modules/vis/gnuplot
[rem] /cvmfs/pilot.eessi-hpc.org/versions/2023.06/software/linux/x86_64/intel/haswell/modules/vis/gnuplot

boegel · 2023-11-18T09:32:56Z

bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2023-11-18T09:32:58Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 853, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)

eessi-bot · 2023-11-18T09:33:02Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/853

date	job status	comment
Nov 18 09:33:01 UTC 2023	submitted	job id `853` awaits release by job manager
Nov 18 09:34:05 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 09:39:07 UTC 2023	running	job `853` is running
Nov 18 09:48:15 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-853.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1700300867.tar.gz` size: 0 MiB (707460 bytes) entries: 40 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

boegel · 2023-11-18T10:08:02Z

Hmm, build of gnuplot/5.4.2-GCCcore-11.2.0 on top of Lua/5.4.3-GCCcore-11.2.0 is failing with errors like:

term.o:term.c:function LUA_dashtype: error: undefined reference to 'lua_pcallk'
term.o:term.c:function LUA_dashtype: error: undefined reference to 'lua_tonumberx'

must be some kind of mixup between Lua in compat layer and Lua dependency...

boegel · 2023-11-18T10:17:49Z

Lua in 2023.06 pilot compat layer is 5.1:

[EESSI pilot 2023.06] $ qlist -IRv | grep -i lua-5
dev-lang/lua-5.1.5-r200::gentoo

boegel · 2023-11-18T10:20:03Z

lua_pcallk is defined in Lua 5.4.x, but not in Lua 5.1.x, so it seems like the include files from the Lua 5.4 dep are getting picked up, while linking is being done to Lua 5.1, and then 💥

edit: and indeed, the failing link command includes -llua5.1, question is why...

…general EasyBuild configuration

…pendency

boegel · 2023-11-18T13:23:02Z

bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2023-11-18T13:23:05Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen3 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 855, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)

eessi-bot · 2023-11-18T13:23:09Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/855

date	job status	comment
Nov 18 13:23:08 UTC 2023	submitted	job id `855` awaits release by job manager
Nov 18 13:23:39 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:27:42 UTC 2023	running	job `855` is running
Nov 18 13:34:49 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-855.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1700314426.tar.gz` size: 2 MiB (2250356 bytes) entries: 112 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:02:03 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1700314426.tar.gz` to S3 bucket succeeded

boegel · 2023-11-18T13:40:44Z

bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/generic
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/generic
bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-11-18T13:40:47Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/generic from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/haswell from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi-hpc.org-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/generic from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_n1 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi-hpc.org-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 856, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 857, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 858, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 859, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 860, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 861, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)
handling command build repository:eessi-hpc.org-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 862, for details & status see {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380 (comment)

eessi-bot · 2023-11-18T13:40:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/856

date	job status	comment
Nov 18 13:40:49 UTC 2023	submitted	job id `856` awaits release by job manager
Nov 18 13:41:59 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:43:05 UTC 2023	running	job `856` is running
Nov 18 13:51:46 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-856.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1700315423.tar.gz` size: 2 MiB (2249936 bytes) entries: 112 modules under 2023.06/software/linux/x86_64/generic/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:02:22 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1700315423.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:40:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/857

date	job status	comment
Nov 18 13:40:53 UTC 2023	submitted	job id `857` awaits release by job manager
Nov 18 13:42:01 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:48:24 UTC 2023	running	job `857` is running
Nov 18 13:57:13 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-857.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1700315806.tar.gz` size: 2 MiB (2257874 bytes) entries: 112 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:02:41 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1700315806.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:40:57Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/858

date	job status	comment
Nov 18 13:40:56 UTC 2023	submitted	job id `858` awaits release by job manager
Nov 18 13:42:03 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:49:32 UTC 2023	running	job `858` is running
Nov 18 13:57:15 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-858.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1700315760.tar.gz` size: 2 MiB (2251467 bytes) entries: 112 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:03:00 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1700315760.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:41:01Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/859

date	job status	comment
Nov 18 13:41:00 UTC 2023	submitted	job id `859` awaits release by job manager
Nov 18 13:41:57 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:48:22 UTC 2023	running	job `859` is running
Nov 18 13:57:12 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-859.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1700315764.tar.gz` size: 2 MiB (2250419 bytes) entries: 112 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:03:19 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1700315764.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:41:04Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/860

date	job status	comment
Nov 18 13:41:03 UTC 2023	submitted	job id `860` awaits release by job manager
Nov 18 13:41:52 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:46:09 UTC 2023	running	job `860` is running
Nov 18 13:56:08 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-860.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1700315711.tar.gz` size: 2 MiB (2175277 bytes) entries: 112 modules under 2023.06/software/linux/aarch64/generic/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:03:37 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1700315711.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:41:08Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/861

date	job status	comment
Nov 18 13:41:07 UTC 2023	submitted	job id `861` awaits release by job manager
Nov 18 13:41:54 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:46:11 UTC 2023	running	job `861` is running
Nov 18 13:56:10 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-861.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1700315708.tar.gz` size: 2 MiB (2174737 bytes) entries: 112 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:03:56 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1700315708.tar.gz` to S3 bucket succeeded

eessi-bot · 2023-11-18T13:41:11Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi-hpc.org-2023.06-software in job dir /project/def-users/SHARED/jobs/2023.11/pr_380/862

date	job status	comment
Nov 18 13:41:10 UTC 2023	submitted	job id `862` awaits release by job manager
Nov 18 13:41:56 UTC 2023	released	job awaits launch by Slurm scheduler
Nov 18 13:47:16 UTC 2023	running	job `862` is running
Nov 18 13:55:04 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-862.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1700315666.tar.gz` size: 2 MiB (2176928 bytes) entries: 112 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `gnuplot/5.4.2-GCCcore-11.2.0.lua` `Lua/5.4.3-GCCcore-11.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `gnuplot/5.4.2-GCCcore-11.2.0` `Lua/5.4.3-GCCcore-11.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Nov 18 14:04:15 UTC 2023	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1700315666.tar.gz` to S3 bucket succeeded

…t/2.1.15-foss/2022b {2023.06}[foss/2022b] biom-format V2.1.15

don't filter Lua dependency

3f5ef9a

boegel added the pilot-2023.06 label Nov 9, 2023

add gnuplot explicitly (dep for OpenFOAM), to trigger re-install afte…

c558a45

…r removing Lua from filtered dependencies in EasyBuild configuration

boegel changed the title ~~{2023.06} don't filter Lua dependency~~ {2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) Nov 18, 2023

remove filter-deps for AOFlagger, since Lua is no longer filtered in …

73097a3

…general EasyBuild configuration

boegel mentioned this pull request Nov 18, 2023

enhance easyconfigs for gnuplot 5.4.x to make sure that Lua dependency is always used easybuilders/easybuild-easyconfigs#19261

Merged

install gnuplot via easyconfig PR that fixing linking error to Lua de…

f1ab7f2

…pendency

boegel force-pushed the 2023.06_Lua branch from 4060d50 to f1ab7f2 Compare November 18, 2023 13:22

EESSI deleted a comment from eessi-bot bot Nov 18, 2023

boegel added the ready-to-deploy Mark a PR as ready to deploy label Nov 18, 2023

bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Nov 18, 2023

bedroge approved these changes Nov 18, 2023

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bedroge merged commit 477ea1d into EESSI:2023.06 Nov 18, 2023
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boegel deleted the 2023.06_Lua branch November 18, 2023 17:38

bedroge mentioned this pull request Dec 1, 2023

{2023.06}[foss/2023a] OpenFOAM v10 #404

Merged

5 tasks

boegel mentioned this pull request Dec 22, 2023

Remove Lua from filtered dependencies #377

Closed

trz42 pushed a commit to trz42/software-layer that referenced this pull request May 27, 2024

Merge pull request EESSI#380 from TopRichard/nessi-2023.06-biom-forma…

0136c0e

…t/2.1.15-foss/2022b {2023.06}[foss/2022b] biom-format V2.1.15

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{2023.06} don't filter Lua dependency (and reinstall `gnuplot/5.4.2-GCCcore-11.2.0`) #380

{2023.06} don't filter Lua dependency (and reinstall `gnuplot/5.4.2-GCCcore-11.2.0`) #380

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{2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380

{2023.06} don't filter Lua dependency (and reinstall gnuplot/5.4.2-GCCcore-11.2.0) #380

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{2023.06} don't filter Lua dependency (and reinstall `gnuplot/5.4.2-GCCcore-11.2.0`) #380

{2023.06} don't filter Lua dependency (and reinstall `gnuplot/5.4.2-GCCcore-11.2.0`) #380

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