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Update README
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bumblenick authored Jun 24, 2020
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Expand Up @@ -61,24 +61,26 @@ Nick Patterson
<[email protected]>


*** NEW ***
1)
Users of ADMIXTOOLS should know that an alternate version in R (native mode -- reimplementation)
written by Robert Maier is also available on Github.
*** NEW ***
1)
version 7.0 has numerous upgrades.
a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis.
This can greatly reduce computation costs.
b) qpAdm, qpWave, qpGraph support qpfstats output as input.
*** This is a much improved way of running with allsnps: YES. ***
c) A new experimental feature of qpGraph (halfscore: YES) allows
comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful
if running with a large number of populations and consider reducing block size say
blgsize: .005

2)
Note that several of the new ideas implemented in version 7.0 were developed collaboratively with Robert Maier, who has implemented them along with the great majority of other ADMIXTOOLS functionality in R:
See https://github.com/uqrmaie1/admixtools
Executables run fast, and it has features not available in this C version, such as interactive
exploration of graph phylogenies

2)
version 7.0 has numerous upgrades.
a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis.
This can greatly reduce computation costs.
b) qpAdm, qpWave, qpGraph support qpfstats output as input.
*** This is a much improved way of running with allsnps: YES. ***
c) A new experimental feature of qpGraph (halfscore: YES) allows
comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful
if running with a large nnumber of populations and consider reducing block size say
blgsize: .005
Executables run fast, and it has features not available in this C version, such as interactive exploration of graph phylogenies.
A manuscript describing the algorithmic ideas and providing documentation of the methods is in preparation.





*** Fairly NEW ***
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