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ADMIXTOOLS version 7.0 6/23/20 (for Linux and Mac) | ||
ADMIXTOOLS version 7.0 6/24/20 (for Linux and Mac) | ||
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See README.INSTALL for installation info. | ||
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@@ -42,6 +42,9 @@ If you have issues with missing lapacke symbols, for example "undefined referenc | |
Similarly for Ubuntu, for "undefined reference to dspev_" | ||
'make LDLIBS="-llapack"' | ||
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For questions about building this software: | ||
Matthew Mah <[email protected]> | ||
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If you have trouble compiling and running our code, try compiling and | ||
running the examples in the examples/ directory. Download the example | ||
datasets from https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/AdmixTools_Example_Data.tar_.gz | ||
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Nick Patterson | ||
<[email protected]> | ||
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*** NEW *** | ||
1) | ||
Users of ADMIXTOOLS should know that an alternate version in R (native mode -- reimplementation) | ||
written by Robert Maier is also available on Github. | ||
See https://github.com/uqrmaie1/admixtools | ||
Executables run fast, and it has features not available in this C version, such as interactive | ||
exploration of graph phylogenies | ||
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2) | ||
version 7.0 has numerous upgrades. | ||
a) Two new executables --qpfstats qpfmv allow precomputation of f-statistic basis. | ||
This can greatly reduce computation costs. | ||
b) qpAdm, qpWave, qpGraph support qpfstats output as input. | ||
*** This is a much improved way of running with allsnps: YES. *** | ||
c) A new experimental feature of qpGraph (halfscore: YES) allows | ||
comparison of 2 phylogenies + a (weak) goodness of fit score. Be careful | ||
if running with a large nnumber of populations and consider reducing block size say | ||
blgsize: .005 | ||
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*** Fairly NEW *** | ||
Lightweight onlline documentation added, thanks to Eric Deveaud | ||
<executable> or <executable> -h to get brief documentation or | ||
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*** NEW *** | ||
*** Fairly NEW *** | ||
Alter number of chromosomes: | ||
numchrom: <zzz> | ||
zzz should be the autosome number (default 22 -- the number for humans) | ||
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