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13 Open 61 Closed
13 Open 61 Closed
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Issues list

Use SynthStrip-derived brainmask instead of current aseg-derived brainmask enhancement New feature or request
#142 opened Oct 18, 2024 by LuciMoore
Deal with WARNING messages output at top of logs in some way so that they don't confuse users enhancement New feature or request
#140 opened Sep 30, 2024 by LuciMoore
1
Output nnU-Net inference/prediction routines as derivatives enhancement New feature or request
#139 opened Sep 19, 2024 by LuciMoore
@LuciMoore
Remove flags not included in ReadTheDocs from usage enhancement New feature or request
#136 opened Sep 11, 2024 by LuciMoore
@LuciMoore
Use GitHub Actions to automatically update version number in Dockerfile enhancement New feature or request good first issue Good for newcomers
#131 opened Aug 27, 2024 by LuciMoore
Suggestions for tar.gz stored on MSI s3 enhancement New feature or request good first issue Good for newcomers
#130 opened Aug 27, 2024 by LuciMoore
Figure out more elegant solution for handling files used in multiple stages of the pipeline enhancement New feature or request
#119 opened Aug 9, 2024 by LuciMoore
FYI: submitted to be included in the bids-apps registry
#109 opened Jun 22, 2024 by yarikoptic
Add fslorient to check orientation and either exit with error if orientation/header info is non-compatible with BIBSNet utilities or use fslorient2std to make compatible enhancement New feature or request
#98 opened Feb 9, 2024 by LuciMoore
T2 images rotated during T2 to T1 alignment in preBIBSNet bug Something isn't working
#50 opened Jun 6, 2023 by moser297
@LuciMoore
3
Make aseg-derived mask only once enhancement New feature or request
#48 opened Jun 2, 2023 by LuciMoore
Test possible bugs with --overwrite flag & possibly default to clearing old outputs until this is resolved bug Something isn't working
#44 opened May 19, 2023 by LuciMoore
3
Quality check output from Segmentation pipeline enhancement New feature or request
#21 opened Nov 4, 2022 by moser297
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