Continuous Deployment (#155)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

* added CD build

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

.github/workflows/cd-build.yml

@@ -0,0 +1,43 @@
+name: CD
+
+on:
+  push:
+    branches:
+     - master
+     - main
+
+jobs:
+
+  coverage:
+    name: Deploy Coverage Results
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Set up Conda with Python 3.8
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          auto-activate-base: false
+
+      - name: Install Package Dependencies
+        shell: bash -l {0}
+        run: |
+          python --version
+          python -m pip install --upgrade pip
+          python -m pip install nose nose-exclude coverage pycodestyle
+
+      - name: Run Tests
+        shell: bash -l {0}
+        run: |
+          python setup.py nosetests
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v1
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          file: coverage.xml
+          flags: unittests

.github/workflows/ci-build.yml

@@ -47,7 +47,7 @@ jobs:
         run: |
           python --version
           python -m pip install --upgrade pip
-          python -m pip install nose nose-exclude coverage coveralls pycodestyle
+          python -m pip install nose nose-exclude coverage pycodestyle
           python -m pip install twine
 
       - name: Run Tests
@@ -116,7 +116,7 @@ jobs:
         run: |
           python --version
           python -m pip install --upgrade pip
-          python -m pip install nose nose-exclude coverage coveralls pycodestyle
+          python -m pip install nose nose-exclude coverage pycodestyle
 
       - name: Run Tests
         shell: bash -l {0}