Final clean up (#154)

* add initial CI setup to develop branch to trigger tests

* Release preparation (#146)

* set fixed package versions

* fixed discrepancy

* test with v3.4.0 of matplotlib

* lowered packages versions for python 3.6 support

* fixed nibabel version

* test github actions

* test running examples

* exclude example tests from nosetests

* fixed script name

* install pysap before running examples

* PySAP installation updates (#150)

* updated conda env

* updated environment

* updated conda env

* removed tensorflow from env

* added pynfft to env

* added Dockerfile

* removed test lines from Dockerfile

* Plug-in versions (#149)

* set plug-in and modopt versions for next release

* updated pysap-mri version

* Added new examples (#152)

Co-authored-by: chaithyagr <[email protected]>
Co-authored-by: Samuel Farrens <[email protected]>

* Release clean up (#151)

* updated readme

* fixed typos

* updated docker instructions

* updated readthedocs to use conda env

* updated nosetests to provide XML outputs (#153)

* updated nosetests to provide XML outputs

* added Docker badge

* Update README.rst

* Update README.rst

* Update ci-build.yml

* Update setup.cfg

* test adding pysphinxdoc

Co-authored-by: Chaithya G R <[email protected]>
Co-authored-by: chaithyagr <[email protected]>

.github/workflows/ci-build.yml

@@ -62,7 +62,7 @@ jobs:
         uses: actions/upload-artifact@v2
         with:
           name: unit-test-results-${{ matrix.os }}-${{ matrix.python-version }}
-          path: pytest.xml
+          path: nosetests.xml
 
       - name: Run Examples
         continue-on-error: true

README.rst

@@ -1,5 +1,5 @@
 
-|CI|_ |Codecov|_ |Python36|_ |Python37|_ |Python38|_ |Python39|_ |PyPi|_ |Doc|_
+|CI|_ |Codecov|_ |Python36|_ |Python37|_ |Python38|_ |Python39|_ |PyPi|_ |Doc|_ |Docker|_
 
 .. |CI| image:: https://github.com/CEA-COSMIC/pysap/workflows/CI/badge.svg
 .. _CI: https://github.com/CEA-COSMIC/pysap/actions?query=workflow%3ACI
@@ -25,6 +25,9 @@
 .. |Doc| image:: https://readthedocs.org/projects/python-pysap/badge/?version=latest
 .. _Doc: https://python-pysap.readthedocs.io/en/latest/?badge=latest
 
+.. |Docker| image:: https://img.shields.io/docker/cloud/build/ceacosmic/pysap
+.. _Docker: https://hub.docker.com/r/ceacosmic/pysap
+
 PySAP
 ======
 

environment.yml

@@ -21,3 +21,4 @@ dependencies:
     - scipy==1.5.4
     - sf_tools==2.0.4
     - termcolor==1.1.0
+    - git+https://github.com/AGrigis/pysphinxdoc.git

setup.cfg

@@ -3,6 +3,8 @@ verbosity=2
 nologcapture=0
 cover-package=pysap
 with-coverage=1
+cover-xml=1
+with-xunit=1
 ignore-files=test_examples.py
 
 [build_sphinx]