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[Internal] [Bug] Conda on Scicomp: Issue with cache clearing #224

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RamiyapriyaS opened this issue Nov 22, 2024 · 0 comments · May be fixed by #232
Open

[Internal] [Bug] Conda on Scicomp: Issue with cache clearing #224

RamiyapriyaS opened this issue Nov 22, 2024 · 0 comments · May be fixed by #232
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@RamiyapriyaS
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Description:

During some runs, a conda environment is not created. The pipeline fails at the first instance that the environment is used (i.e. metadata validation).

  • Run Environment: Scicomp server

Steps to re-create:

  • Run test command

Error message:
ERROR ~ Error executing process > 'TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION'

Caused by:
Process TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION terminated with an error exit status (1)

Command executed:

validate_metadata.py --meta_path mpxv_test_metadata.xlsx --output_dir . --custom_fields_file /scicomp/home-pure/rjd0/tostadas/assets/custom_meta_fields/example_custom_fields.json --validate_custom_fields false

Command exit status:
1

Command output:
(empty)

Method to resolve:

Clear conda environments in cache

conda env list
conda env remove -p /path/to/any/tostadas/env/in/cache/

@RamiyapriyaS RamiyapriyaS added the bug Something isn't working label Nov 22, 2024
@RamiyapriyaS RamiyapriyaS self-assigned this Nov 22, 2024
@jessicarowell jessicarowell linked a pull request Dec 12, 2024 that will close this issue
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