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During some runs, a conda environment is not created. The pipeline fails at the first instance that the environment is used (i.e. metadata validation).
Run Environment: Scicomp server
Steps to re-create:
Run test command
Error message:
ERROR ~ Error executing process > 'TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION'
Caused by:
Process TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION terminated with an error exit status (1)
Description:
During some runs, a conda environment is not created. The pipeline fails at the first instance that the environment is used (i.e. metadata validation).
Steps to re-create:
Error message:
ERROR ~ Error executing process > 'TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION'
Caused by:
Process
TOSTADAS_WORKFLOW:TOSTADAS:METADATA_VALIDATION
terminated with an error exit status (1)Command executed:
validate_metadata.py --meta_path mpxv_test_metadata.xlsx --output_dir . --custom_fields_file /scicomp/home-pure/rjd0/tostadas/assets/custom_meta_fields/example_custom_fields.json --validate_custom_fields false
Command exit status:
1
Command output:
(empty)
Method to resolve:
Clear conda environments in cache
conda env list
conda env remove -p /path/to/any/tostadas/env/in/cache/
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