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@mandysulli mandysulli released this 08 Nov 01:35
· 59 commits to master since this release
v1.2.0
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Learn about vigilant mode.

Enhancements

  • PR #10 - reformat the outputs structure
  • PR #11 - changes the parquet_files flag to reformat_tables flag. This flag now reformats the report tables into parquet files and csv files.
  • PR #12 - Restructure so that the readqc subworkflow only runs when the flag --read_qc is set to true. Otherwise FastQC and MultiQC will not run.
  • PR #13 - creating and updating docker containers so that they contain no vulnerabilities.
  • PR #14 - updating scripts and logs to reflect new changes.
  • PR #16 - Continuing to update containers to containers with no vulnerabilities.
  • PR #17 - Updating Java versions in containers.
  • PR #18 - Merging all changes that allow MIRA-NF to run in both AWS-omics and on HPC's.
  • PR #19 - Altering workflows to skip the subsampling process if a values greater than 0 is not provide using the subsample_reads flag
  • PR #20 - Adding the ecr_registry parameter that allows a user to pass their ecr registry for AWS to the workflow.

Parameters

Old parameter New parameter
--parquet_files --reformat_tables
--read_qc
--ecr_registry
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