Merge pull request #31 from CCBR/rseqc_path

Fix rseqc path
CCBR · Apr 1, 2024 · 2697939 · 2697939
2 parents b24184e + 2eb0cf3
commit 2697939
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diff --git a/rnaseq/ccbr_rseqc_4.0.0/Dockerfile b/rnaseq/ccbr_rseqc_4.0.0/Dockerfile
@@ -1,15 +1,11 @@
-FROM nciccbr/ccbr_ubuntu_base_20.04:v1.0
+FROM nciccbr/ccbr_ubuntu_base_20.04:v6
 
-RUN apt-get install -y zlibc zlib1g zlib1g-dev
-
-RUN apt-get install -y r-base-core libboost-dev
-
-RUN pip3 install --upgrade pip && pip3 install RSeQC
+RUN pip3 install --upgrade pip && \
+    pip3 install RSeQC==4.0.0 && \
+    tin.py -h
 
 COPY Dockerfile /opt2
 
 WORKDIR /data2
 
 RUN apt-get clean
-
-MAINTAINER [email protected]
diff --git a/rnaseq/ccbr_rseqc_4.0.0/meta.yml b/rnaseq/ccbr_rseqc_4.0.0/meta.yml
@@ -0,0 +1,4 @@
+dockerhub_namespace: nciccbr
+image_name: ccbr_rseqc_4.0.0
+version: v2
+container: "$(dockerhub_namespace)/$(image_name):$(version)"