Merge pull request #25 from CCBR/ucsc-bedsort

Create container w/ ucsc-bedsort
CCBR · Feb 8, 2024 · b24184e · b24184e
2 parents 70a7532 + 330ed26
commit b24184e
Showing 1 changed file with 23 additions and 0 deletions.
diff --git a/common/ccbr_ucsc/Dockerfile b/common/ccbr_ucsc/Dockerfile
@@ -0,0 +1,23 @@
+FROM nciccbr/ccbr_ubuntu_base_20.04:v6
+
+# build time variables
+ARG BUILD_DATE="000000"
+ENV BUILD_DATE=${BUILD_DATE}
+ARG BUILD_TAG="000000"
+ENV BUILD_TAG=${BUILD_TAG}
+ARG REPONAME="000000"
+ENV REPONAME=${REPONAME}
+
+# insert your layers here
+RUN mamba install -c bioconda \
+    ucsc-bedsort
+
+
+# Save Dockerfile in the docker
+COPY Dockerfile /opt2/Dockerfile_${REPONAME}.${BUILD_TAG}
+RUN chmod a+r /opt2/Dockerfile_${REPONAME}.${BUILD_TAG}
+
+# cleanup
+WORKDIR /data2
+RUN apt-get clean && apt-get purge \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*