fix: include containers config in main config after profiles

CCBR · Sep 19, 2023 · b14ad62 · b14ad62
1 parent 65030d1
commit b14ad62
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -71,6 +71,8 @@ profiles {
     }
 }
 
+includeConfig 'conf/containers.config'
+
 // Export these variables to prevent local Python/R libraries from conflicting with those in the container
 // The JULIA depot path has been adjusted to a fixed path `/usr/local/share/julia` that needs to be used for packages in the container.
 // See https://apeltzer.github.io/post/03-julia-lang-nextflow/ for details on that. Once we have a common agreement on where to keep Julia packages, this is adjustable.