fix: don't use labels starting with process_ for output dir paths

CCBR · Sep 7, 2023 · ae12574 · ae12574
1 parent 47fc0d6
commit ae12574
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -2,7 +2,7 @@
 process {
 
     publishDir = [
-        path: { task.label ? "${params.outdir}/${task.label.join('/')}/${task.process.tokenize(':')[-1].toLowerCase()}" : "${params.outdir}/${task.process.tokenize(':')[-1].toLowerCase()}" },
+        path: { task.label ? "${params.outdir}/${task.label.findAll { !it.startsWith('process_') }.join('/')}/${task.process.tokenize(':')[-1].toLowerCase()}" : "${params.outdir}/${task.process.tokenize(':')[-1].toLowerCase()}" },
         mode: params.publish_dir_mode,
         saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
     ]

diff --git a/modules/local/qc.nf b/modules/local/qc.nf
@@ -27,6 +27,7 @@ process FASTQC {
 process FASTQ_SCREEN {
     tag { meta.id }
     label 'qc'
+    label 'process_low'
 
     input:
         tuple val(meta), path(fastq), path(conf)