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Revert "ci: see if moving production.config back to modules.config ca…
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…uses error"

This reverts commit ed55870.

Yeah, it doesn't work because:

  Process requirement exceeds available CPUs -- req: 32; avail: 2
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kelly-sovacool committed Sep 7, 2023
1 parent ed55870 commit 47fc0d6
Showing 1 changed file with 1 addition and 61 deletions.
62 changes: 1 addition & 61 deletions conf/modules.config
Original file line number Diff line number Diff line change
@@ -1,3 +1,4 @@
// additional process directives are in conf/production.config
process {

publishDir = [
Expand All @@ -16,64 +17,3 @@ process {
]
}
}

// additional process directives are in conf/production.config
process {
withName: 'TRIM.*' {
container = 'nciccbr/ncigb_cutadapt_v1.18:latest'
cpus = 16
memory = '32 G'
}
withName: 'FASTQC' {
container = 'nciccbr/ccrgb_qctools:latest'
cpus = 32
memory = '24 G'
}
withName: 'FASTQ_SCREEN' {
container = 'nciccbr/ccbr_fastq_screen_0.14.1'
containerOptions = "--bind ${params.fastq_screen.db_dir}"
cpus = 24
memory = '24 G'
}
withName: 'ALIGN.*|INDEX_BAM' {
container = 'nciccbr/ccbr_ubuntu_base_20.04:latest'
cpus = 32
memory = '48 G'
}
withName: 'PRESEQ' {
container = 'nciccbr/ccbr_preseq_v2.0:v1'
cpus = 16
memory = '24 G'
}
withName: 'PHANTOM_PEAKS' {
container = 'quay.io/biocontainers/phantompeakqualtools:1.2.2--hdfd78af_1'
cpus = 1
memory = '24 G'
}
withName: 'DEDUPLICATE' {
container = 'nciccbr/ccbr_macs2_2.2.9.1:v1'
cpus = 4
memory = '24 G'
}
withName: 'QC_.*|PPQT_.*' {
container = 'nciccbr/ccbr_ubuntu_base_20.04:latest'
}
withName: 'NGSQC_GEN' {
container = 'nciccbr/ccbr_ngsqc_0.31:v1'
cpus = 1
memory = '120 G'
}
withLabel: 'deeptools' {
container = 'nciccbr/ccbr_deeptools_3.5.3:v1'
cpus = 16
memory = '24 G'
}
withName: 'BAM_COVERAGE|PLOT_FINGERPRINT|COMPUTE_.*|NORMALIZE_INPUT' {
cpus = 32
memory = '24 G'
}
withName: 'MULTIQC' {
container = 'nciccbr/ccbr_multiqc_1.15:v1'
memory = '24 G'
}
}

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