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This repository contains data description for BIMS export

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BBMRI-cz/bbmri-export

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bbmri-export

Patient information

Attribute Attribute Format
patient_id integer
birth_date ISO_8601
sex male/female/unknown
status alive/deceased/unknown
consent boolean
consent_sign_date ISO_8601
consent_retraction_date ISO_8601
country_of_residence ISO_3166-3

Specimen information

  • There are 5 tipes of specimen
    • Tissue, Serum, Genome, DiagnosisMaterial, Blood

Elements of each specimen

Shared elements

  • SampleID
  • BiopsyID
  • PredictiveID
  • TakingDate (Date - ISO 8601)
  • Diagnosis (ICD-10)
  • Retrieved (preop, op, postop, unknown)

Specific additional elements for Tissue

  • MaterialType
  • TNM (TNM-7)
  • pTNM (TNM-7)
  • Topography (ICD-O-3)
  • morphology (ICD-O-3)
  • grading (SNOMED CT 373372005-family tree)
  • cutTime (Date and time ISO 8601)
  • freezeTime (Date and time ISO 8601)

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